1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCAATATAATCGTTGTACTTCCCCCTATCTTGATCGTGATGCTGAGGCTGTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggctctctttgtttttacccattatatgctgtagtttcgttgttagattttttctttataggaatttatggtcctgtag
species | Glycine max |
transcript | GLYMA20G26580.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTA-TACATGGAGATCTACACACTGGTTCEST: gi|254322009|gb|GR837423.1|GR837423
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCEST: gi|24205958|gb|BU965211.1|BU965211
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCEST: gi|151395015|gb|EV264886.1|EV264886
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCEST: gi|192298387|gb|FG988433.1|FG988433
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAA-TCCAA GTTCATTGAGAGGGCCCAGGCACTA-TACATGGAGATCTACACACTGGTTCEST: gi|10232185|gb|BE801081.1|BE801081
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCEST: gi|254332676|gb|GR844046.1|GR844046
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
EST: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAA GTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
genomic: GTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggc ... ggtcctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAATATAATCGTTGTACTTCCCCCTATCTTGATCGTGATGCTGAGGCTGTTCGGGAAGACAATCTGCTGAAGCTTGAAGTTGCTGAGCTGAAATCCAAgtattgtggctctctttgtttttacccattatatgctgtagtttcgttgttagattttttctttataggaatttatggtcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA