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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTATCCAGGTTTTGGTCTATCTGAAGGTTTACATGGTTACATACCAAATTTTGATGATTTGGTTGATGACGTTATAGAACATTTTACAAAAATCAAAGgtaaaaccttttagcatcctggctgtcacattgatcattgttgtaatcttttatatgtgaaagtacagaatgttgtattgttgttgatcatgctttgtaattcaattgacag

Basic information

species Glycine max
transcript GLYMA20G25020.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25020.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G77420.1 (Arabidopsis thaliana), 5'ss of exon 4
GACTATCCAGGTTTTGGTCTATCTGAAGGTTTACATGGTTACATACCAAATTTTGATGATTTGGTTGATGACGTTATAGAACATTTTACAAAAATCAAAGgtaaaaccttttagcatcctggctgtcacattgatcattgttgtaatcttttatatgtgaaagtacagaatgttgtattgttgttgatcatgctttgtaattcaattgacag
||| |||| ||||||||| |||| || |||||||||||| |||| |||| ||||||||| || |  ||  | | ||| ||||| || || ||||| ||||||| |    | ||  ||  |  ||||   |||| |  ||| |||    | ||   | ||    |     | || || |  ||  |                           
GACCATCCTGGTTTTGGTTTATCAGATGGTTTACATGGTCACATTCCAAGTTTTGATGACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGgtata----tctaa-attgtacctgtt--attgctttttggtgttgaatcttgcttttgggttttatttaagtggtttgattcctag-------------------------

upper sequence: GLYMA20G25020.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g03620.t01 (Vitis vinifera), 5'ss of exon 4
GACTATCCAGGTTTTGGTCTATCTGAAGGTTTACATGGTTACATACCAAATTTTGATGATTTGGTTGATGACGTTATAGAACATTTTACAAAAATCAAAGgtaaaaccttttagcatc-ctggctgtcacattgatcattgttgtaatctt--ttatatgtgaaagtacagaatgttgtattgt------tgttgatcatg--ctttgtaattca--attgacag
|||||||||||||||||||||||||| || ||||| ||||| ||  |||  ||||||||  | |||||||| ||||| || |||| |||||||||||||||||     ||  || |   |  | | ||| | | | |||   | |||||||  || ||  | |    |   | ||   ||   |      || || || ||  |||  | ||| |  | ||  ||
GACTATCCAGGTTTTGGTCTATCTGACGGATTACACGGTTATATCTCAAGCTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAGgtatggtattcaagtactgcctgttatcataatca-catcactataatcttgcttgtacattattccatctattgacttagcatatcaaatgctgttcctgatcttgttcatttatgactggtag