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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGAGACTGTAAGACAGGAGCTGCATGCTTCACATCCTGATGACCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcacttgtagctcataatattgcttttctagttgctagagatggttatttatcttttctataaacacttcacacctcttaatatcattttaaatt...

Basic information

species Glycine max
transcript GLYMA20G24100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 3
GATAGAGACTGTAAGACAGGAGCTGCATGCTTCACATCCTGATGACCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcacttgtagctcataatattgcttttctagttgctagagatggttatttatcttttctataaacacttcacacct----cttaatatcattttaaatt--
 |||||| |||| ||||||||||||||| ||   || || || |||    | ||||| |||||||||||||||||||||||||| | ||||||||| || |||| ||| |  | || |  | || || |       ||| || |  | |||||  | ||     |  |  |||   ||| |    |||| ||  | |  |  |   
TATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcattctttgcacg-agtactggtc-----attgatatatgttgttatacagctagggcagtattactaagcacttactacttagtagaactggagttgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208064027|gb|GD862013.1|GD862013
EST:     TGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: TGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|10238100|gb|BE806988.1|BE806988
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAA
EST: gi|17519473|gb|BM188515.1|BM188515
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|18725738|gb|BM523643.1|BM523643
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|6341594|gb|AW164418.1|AW164418
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATNTGAAAAAGGCCGAGTTCAATCGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|308098935|gb|HO760776.1|HO760776
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|308098964|gb|HO760805.1|HO760805
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|208175401|gb|GD976796.1|GD976796
EST:     TATTGTGGTTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GCTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: TATTGTGG-TTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|192294523|gb|FG987452.1|FG987452
EST:     GGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
genomic: GGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|193308667|gb|FK275362.1|FK275362
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGA
EST: gi|254340610|gb|GR854338.1|GR854338
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATAGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|18038853|gb|BM307147.1|BM307147
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
EST: gi|298165586|gb|HO011635.1|HO011635
EST:     ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAA                         GTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA
genomic: ATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcact ... tctgttgcagGTTTCTAGATCTATTGGTGATGTATATTTGAAAAAGGCCGAGTTCAATCGA