Sequence
atgc intronic sequence ATGC exonic sequenceTACTTGCTCTGGGCTTTGGCTTTGTGGAGGTTGGCTCTGTTACTCCTGTCCCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCAAAAAGAAGGgtaagagtttatattttttttctttgttcttctgcttctgattaacagattgaatctgttttatattttcttttttgacttttccaatcacttctatacaccgcagaaggttgttgatgctataagatgaacttttaaaaagtttgcttatgttatttacattgctctaagactgatcaatttaatgtgcag
Basic information
species | Glycine max |
transcript | GLYMA20G23670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G23670.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G23300.1 (Arabidopsis thaliana), 5'ss of exon 3
TACTTGCTCTGGGCTTTGGCTTTGTGGAGGTTGGCTCTGTTACTCCTGTCCCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCAAAAAGAAGGgtaagagtttatattttttttctttgttcttctgcttctgattaacagattgaatctgttttatattttcttttttgacttttccaatcacttctatacaccgcagaaggttgttgatgctataagatgaacttttaaaaagtttgcttatgttatttacattgctctaagactgatcaatttaatgtgcag
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TGCTAGGGATGGGATTTGGCTTTGTTGAGGTAGGCTCTGTAACTCCTGTTCCACAAGAAGGCAATCCGAAACCACGTATCTTCAGACTAAGCCAAGAAGGgtgagaatctctaatctataaaagaccttcaatgattgaagaagcaagatagtttaaactaaaagacttatattttggtcctcccag---------------------------------------------------------------------------------------------------------
upper sequence: GLYMA20G23670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 3
TACTTGCTCTGGGCTTTGGCTTTGTGGAGGTTGGCTCTGTTACTCCTGTCCCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCAAAAAGAAGGgtaagagtttatattttttttctttgttcttctgcttctgattaacagattgaatctgttttatattttcttttttgacttttccaatcacttctatacaccgcagaaggttgttgatgctataagatgaacttttaaaaagtttgcttatgttatttacattgctctaagactgatcaatttaatgtgcag
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TACTTGGGTTAGGTTTTGGCTTTGTAGAGGTTGGTTCTGTTACCCCTGTTCCACAGGAGGGTAATCCAAAGCCTCGTATATTCAGACTGCGTCATGAAGGgtaagaatgtatgctatc-------atatttttgatttaaatta--caacttagtttgtcttacaaa------ctaaaaaagatgaaatgatgcactgtcttgttgaatcaagtt-----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9899684|gb|BE608652.1|BE608652EST: CCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCAAAAAGAAGG TGCTGTAATAAATAGATGTGGCTTTAATAGTGAGGGAATTGTTGTTGTTGC
genomic: CCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCAAAAAGAAGGgtaagagttt ... taatgtgcagTGCTGTAATAAATAGATGTGGCTTTAATAGTGAGGGAATTGTTGTTGTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTTGCTCTGGGCTTTGGCTTTGTGGAGGTTGGCTCTGTTACTCCTGTCCCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCAAAAAGAAGGgtaagagtttatattttttttctttgttcttctgcttctgattaacagattgaatctgttttatattttcttttttgacttttccaatcacttctatacaccgcagaaggttgttgatgctataagatgaacttttaaaaagtttgcttatgttatttacattgctctaagactgatcaatttaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG