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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgttgcag

Basic information

species Glycine max
transcript GLYMA20G23080.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g14270.3 (Oryza sativa), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctt-tcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgttgcag
|||| |||||||| || ||||||||||| |||||||| ||  | ||||||||  ||||||||||||| |||||||||||||||||||| || || ||||||| ||      ||   ||| |   |||| |||||  | || |    |  |     ||   | |   | || || |  ||   ||   ||           
CTGTAAAGCATGAGCAAAAGCTTGACTGTGGTGGTGGATATGTCAAGTTGCTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGgtaatg-----attttcttcta--ttgtagctctgattctcacttttctcaagattagtactagttatctaacttggtacttttgaatgcag--------

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G074687_T01 (Zea mays), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgt-tgcag
|||| ||||| || |||||||||||||| |||||||| ||| | ||||||||  |||||||||| || ||||| ||||| |||||||| ||  |||||||||    |||  ||    | |||      | || ||||          ||| |||||||  |         |    ||||| ||  || |||||| |||||
CTGTGAAGCACGAGCAGAAGCTTGACTGTGGTGGTGGTTACGTCAAGTTGCTGGGTGGTGATGTAGACCAGAAAAAATTCGGTGGGGACACAACTTACAGgtagcctatggatatattcttg------tactttttctc--------cctatcatatctgatcttgtagtagtagttaac-ttcattcttctgtatgcag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCT---CAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgt--tgcag
   | ||||| || ||||||||||||||||||||||||||| | ||||||||     |||||||||| || ||||||||||||||||| || ||  |||||||||    | |  |  |  | ||| |  | | ||  | |||            ||||||| ||     | ||  ||| ||||  |  || ||||||  |||||
---TGAAGCACGAGCAGAAGCTTGACTGCGGTGGTGGCTACGTCAAGTTGCTGGGTGGTGGTGATGTAGACCAGAAGAAATTTGGTGGAGACACATCTTACAGgtagactttgaa--caatattgttgcgctccttctcccta-----------tcatatctcat----cttgtacttgtaac-ctcattcttctgtactgcag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgttgcag
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||| |||||| || || || ||||||||||||||  ||          ||| | ||       ||||| |            ||| |     ||||||| | | | |     ||| ||  ||||  |   
CTGTCAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGgtgtgtt----------tttcggtta------ctttcatatcaaa----cttcaaacattcaaacaccaggcttatctttctttttttatctgcag---

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G09210.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcat-atcgcaaaacacctgaccttttaacatttgttgttctgt-tgcag
| |||||||| || || |||||||||||||||||||||||||||||| | || |||||||||||||| || |||||||||||||| || || || |||||||        |||| | | |   | |  |  |||   |  ||       |  ||| |  |   || |  | ||       ||| || | || |   |||||
CAGTCAAGCACGAGCAAAAGCTTGACTGCGGTGGTGGCTACATGAAGCTACTAAGTGGTGATGTTGACCAAAAGAAATTTGGTGGAGACACACCATACAGgtacaaatcctatctcatctcactcttatcatctcaacctattatcaattaacatcaatgtttaaaaa-taacaacc---catctgcttttttacctgcag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgt----tgcag
|||| ||||| ||||| ||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||  | |    || ||  |||    |   | || |    |       |||    | |        || ||||   ||  |||||  ||||||    |||||
CTGTTAAGCACGAACAAAAGCTAGATTGTGGTGGTGGCTACATGAAGTTGCTCAGTGGTGAAGTTGATCAAAAGAAATTTGGTGGTGATACCCCTTATAGgtgacatgtg---cctctgctgaacaatcctttttgctcctttcaattttctttcctagttgggt-tctaacctgacaaattttgt-attctgtggactgcag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 5'ss of exon 3
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgttgcag-------------
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||| | |  ||| |   |||    ||||||  | |  | |  |   || |||        ||||   | |  || ||| | | |||||| | ||||  |              
CTGTTAAACATGAACAGAAGCTTGACTGTGGTGGTGGATACATGAAGTTGCTCAGTGGTGAGGTTGATCAAAAGAAATTTGGTGGTGATACCCCATACAGgtcagtgttatttttgcttactgtttgtt--tgtccctttgtctatgactc--------caaacttcttatcccttttaaagttgttgatttgttataaaacatgattgcag

upper sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 3
lower sequence: EDP09399 (Chlamydomonas reinhardtii), 5'ss of exon 3
----CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGA-AGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgttgcag
    | ||||||||||| ||| | || |||||||||||||||||||| |||       ||||||      | |||  |   ||| ||     |  | | ||   ||||  |       |   |  |||    |  |    |  || ||   ||                                                   
TTCTCCGTCAAGCATGAGCAGGACCTGGACTGCGGTGGTGGCTACATCAAG-------GTGGTGCCCGCTACCAGgtacgcattgggctcacacgcgcattg-gggtgcgtgtggcgacggttgctgacccttcacctggtgatgttgcacgcgcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600783|gb|DB956217.1|DB956217
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|254332429|gb|GR843906.1|GR843906
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|4289620|gb|AI437497.1|AI437497
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|209719566|gb|BW651018.1|BW651018
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|209711757|gb|BW678939.1|BW678939
EST:     CTCAGTGGTGATGTTGATCAGAAGAAGTTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|7147510|gb|AW509432.1|AW509432
EST:     GGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: GGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|213613490|gb|DB956948.1|DB956948
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|213587860|gb|DB959684.1|DB959684
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|5770360|gb|AI973534.1|AI973534
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACANAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|208318470|gb|GE114157.1|GE114157
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGAATATCTGTGGTT
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGA-TATCTGTGGTT
EST: gi|213599236|gb|DB960004.1|DB960004
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|17401784|gb|BM178566.1|BM178566
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|21595442|gb|BQ610481.1|BQ610481
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|213615216|gb|DB965024.1|DB965024
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|6666007|gb|AW277466.1|AW277466
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|7283812|gb|AW596414.1|AW596414
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTNTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|193616577|gb|FK568223.1|FK568223
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|17023092|gb|BM094126.1|BM094126
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|24135667|gb|BU926177.1|BU926177
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|24136611|gb|BU927121.1|BU927121
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTACGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|7692393|gb|AW760501.1|AW760501
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|6454145|gb|AW184893.1|AW184893
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTNTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|213611686|gb|DB969074.1|DB969074
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|9264547|gb|BE352694.1|BE352694
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGT-CACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|18692916|gb|BM521764.1|BM521764
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|254315486|gb|GR825295.1|GR825295
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|21888935|gb|BQ742148.1|BQ742148
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|14990872|gb|BI316545.1|BI316545
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCATATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|6718756|gb|AW306403.1|AW306403
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|254348788|gb|GR852467.1|GR852467
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|15813480|gb|BI785755.1|BI785755
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|209721183|gb|BW659195.1|BW659195
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|18692767|gb|BM521615.1|BM521615
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|26045988|gb|CA783372.1|CA783372
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCGGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|209698331|gb|BW678062.1|BW678062
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|15203196|gb|BI425964.1|BI425964
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|10710585|gb|BF010303.1|BF010303
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATNTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTGCAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|193480106|gb|FK447702.1|FK447702
EST:     CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: CTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
EST: gi|207688748|gb|GD671267.1|GD671267
EST:     TGGTGGTGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAG                         TATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC
genomic: TGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttata ... tctgttgcagTATTATGTTTGGCCCAGATATCTGTGGTTACAGTACAAAGAAAGTACACGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTCAAGCATGAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGATCAGAAGAAATTTGGTGGGGATACTCCTTACAGgtgatttatatatccccttttgatttgttgctctttcctgatgggtgcctctcatatcgcaaaacacctgaccttttaacatttgttgttctgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG