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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAATGTCAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattcagttttccttgtttagatcagttgttgtggtgtaatcttatttttgaaataatctctctatcatgtactgtatctgctgaatcagaacatagcataagaacaggcgctgaattctttatagatatgtgcttgcatctgacatatattgatttttttcccctacag

Basic information

species Glycine max
transcript GLYMA20G22720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00830.t01 (Vitis vinifera), 5'ss of exon 3
CAAGAATGTCAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattcagttttccttgtttagatcagttgttgtggtgtaatcttatttttgaaataatctctctatcatgtactgtatctgctgaatcagaacatagcataagaacaggcgctgaattctttatagatatgtgcttgcatctgacatatattgatttttttcccctacag
||||||||| |||||||| || |||||||| |||||||||||||| ||||| |||||||| || |||||||| |||| ||||||||| |||||||| ||||| ||||||    |||| |     ||  |  ||||| ||   |  | ||   ||    || | |  |  || |  | |||     |||   || | |      ||      |     | | |   | |||  | | |  |||   |||| | |                      
CAAGAATGTGAGTGGGCGCATCTTAGTTGGTTTGAGGTGGTGGAACGAAATAAATGATCTAGGAGAGAGTGTGTGGAGATTTGAATGCCTTGACCAAGAGgttggtattggcatttcat-----aggacttttgttatgagtttcttttccctt---gatcaccattgaatgaaatgctga--tggcttgttctggagtccttatgcatgaattttatcattgggtaatatctttatcattgttgctgatacag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134284|gb|AW132677.1|AW132677
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: gi|16995640|gb|BM085012.1|BM085012
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: gi|213608370|gb|DB963104.1|DB963104
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: gi|298181305|gb|HO022744.1|HO022744
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: gi|23057344|gb|BU578018.1|BU578018
EST:     TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG                         TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG