Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttccctcctttttttctaatatcaatcttatatacactcatttatgcagtttgaaatgattaactcttgcactgtctcatttactgtgcttac...

Basic information

species Glycine max
transcript GLYMA20G22600.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 3
GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttccc---tcctttttttctaatatcaatcttata-tacact---------catttatgcagtttgaaatgattaactcttgcactgtctcatttactgtgcttac
|| |||||||| ||||||||||| || || ||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || |||||||||||  | |       | ||  ||    | |  |||| |||  |             ||||| |||  ||| |  ||||||||  || |   |  ||               
GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAGgtatatatgcttgagcacattccttaggttttggatctcatagcatgtcaggagatgccatttttgcctttttaggtgattaacattttcttgggttcta-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591295|gb|DB959865.1|DB959865
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|5605873|gb|AI899971.1|AI899971
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209716478|gb|BW657522.1|BW657522
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTACGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|18039891|gb|BM308185.1|BM308185
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209721765|gb|BW666385.1|BW666385
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|7686353|gb|AW757001.1|AW757001
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|254333709|gb|GR848627.1|GR848627
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|213607101|gb|DB965071.1|DB965071
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|192296530|gb|FG991636.1|FG991636
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|213604448|gb|DB970624.1|DB970624
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|22522553|gb|BU081364.1|BU081364
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|208111645|gb|GD911911.1|GD911911
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|298175413|gb|HO015046.1|HO015046
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCATGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209700632|gb|BW670435.1|BW670435
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|213593805|gb|DB957925.1|DB957925
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209696848|gb|BW680470.1|BW680470
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|254327042|gb|GR836651.1|GR836651
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|8826044|gb|BE209774.1|BE209774
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209702060|gb|BW670544.1|BW670544
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|298177763|gb|HO027316.1|HO027316
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209720625|gb|BW654452.1|BW654452
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|8826054|gb|BE209784.1|BE209784
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|213591448|gb|DB955740.1|DB955740
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|15814184|gb|BI786459.1|BI786459
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|26058927|gb|CA801841.1|CA801841
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209699787|gb|BW655800.1|BW655800
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|298189801|gb|HO038204.1|HO038204
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|8825941|gb|BE209671.1|BE209671
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT