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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttccctcctttttttctaatatcaatcttatatacactcatttatgcagtttgaaatgattaactcttgcactgtctcatttactgtgcttac...

Basic information

species Glycine max
transcript GLYMA20G22600.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 3
GAAATGGAAGCCACAGTTGTTGATGGCAACGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttccc---tcctttttttctaatatcaatcttata-tacact---------catttatgcagtttgaaatgattaactcttgcactgtctcatttactgtgcttac
|| |||||||| ||||||||||| || || ||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || |||||||||||  | |       | ||  ||    | |  |||| |||  |             ||||| |||  ||| |  ||||||||  || |   |  ||               
GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAGgtatatatgcttgagcacattccttaggttttggatctcatagcatgtcaggagatgccatttttgcctttttaggtgattaacattttcttgggttcta-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213589828|gb|DB969621.1|DB969621
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|26058927|gb|CA801841.1|CA801841
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209720625|gb|BW654452.1|BW654452
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|209699787|gb|BW655800.1|BW655800
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|18039891|gb|BM308185.1|BM308185
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|192296530|gb|FG991636.1|FG991636
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|22522553|gb|BU081364.1|BU081364
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|208111645|gb|GD911911.1|GD911911
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|213616715|gb|DB971240.1|DB971240
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|15814184|gb|BI786459.1|BI786459
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|254333709|gb|GR848627.1|GR848627
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: gi|254327042|gb|GR836651.1|GR836651
EST:     GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG                         ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT