1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAAGACCGAAAATCCAGATGAAGTGATGGAGATTGTAAAAGTTATAACTACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcacatgctactaggtttaaaatttttggtaatgcatgctactgtgactatttatattagtttttaaaatatcttctcttttctttacag
species | Glycine max |
transcript | GLYMA20G22090.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAAAATAACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|151404862|gb|EV274676.1|EV274676
genomic: CAAAAAT-ACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|208086939|gb|GD883319.1|GD883319
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|15000159|gb|BI320973.1|BI320973
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|15000274|gb|BI321088.1|BI321088
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|19271164|gb|BM887420.1|BM887420
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|298176542|gb|HO023129.1|HO023129
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|9819641|gb|BE555154.1|BE555154
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|8283494|gb|BE021053.1|BE021053
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCCAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTEST: gi|193525897|gb|FK478896.1|FK478896
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGT
EST: AAAAAATAACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|19452639|gb|BM954049.1|BM954049
genomic: -AAAAAT-ACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTEST: gi|209729516|gb|BW651856.1|BW651856
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|7684961|gb|AW755609.1|AW755609
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|192326394|gb|FK015911.1|FK015911
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|298176621|gb|HO023208.1|HO023208
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|208087969|gb|GD891097.1|GD891097
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|298175563|gb|HO018274.1|HO018274
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|208183785|gb|GD983267.1|GD983267
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: CCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|15202225|gb|BI425289.1|BI425289
genomic: CCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGAT TATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
genomic: ACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGCCTGTACAACCTTTTGGAGACTCCATACTGCCAGTTTTATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGACCGAAAATCCAGATGAAGTGATGGAGATTGTAAAAGTTATAACTACAAAAATACTCCAGCAGCCAAATGAAAAGCCTGCTGTGCGATTGAAGATgtaatgtcacatgctactaggtttaaaatttttggtaatgcatgctactgtgactatttatattagtttttaaaatatcttctcttttctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA