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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGATGCCGAGGACATATGTGGTGTTGTTGCGAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttattatcttgtaaatgatactttgcaattgaaaccttatgtgatgttgtctgttatcttgtctgtatatgatttcctattgtagaatctagata...

Basic information

species Glycine max
transcript GLYMA20G21510.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709400|gb|BF009124.1|BF009124
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|298192521|gb|HO036603.1|HO036603
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|192325421|gb|FK018377.1|FK018377
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|209724913|gb|BW669602.1|BW669602
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|254320358|gb|GR831166.1|GR831166
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACA-GATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|13791212|gb|BG653803.1|BG653803
EST:     AGACAAACTTTTGTTGTGGACAAAGACAGCGGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTG
genomic: GGACAAACTTTCGTTGTGGACAAAGACAGCGG-CAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTG
EST: gi|298197400|gb|HO044879.1|HO044879
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAA
EST: gi|192310625|gb|FG999592.1|FG999592
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|120532041|gb|EH260174.1|EH260174
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|209700394|gb|BW664407.1|BW664407
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|192310624|gb|FG999591.1|FG999591
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|7692491|gb|AW760596.1|AW760596
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|120533215|gb|EH261348.1|EH261348
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: gi|23733803|gb|BU765115.1|BU765115
EST:     AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG                         ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA