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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatctaaattaatttttaggtgtttgttccgtatatgaatgatcattgacttggggctctgggcttgtttttaatatctgtgaatatctctgtag

Basic information

species Glycine max
transcript GLYMA20G21250.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295086|gb|FG986805.1|FG986805
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|58022880|gb|CX709621.1|CX709621
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|10234556|gb|BE803444.1|BE803444
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|12689942|gb|BG156278.1|BG156278
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|58020838|gb|CX707580.1|CX707580
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGTACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|14990237|gb|BI315910.1|BI315910
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|7588010|gb|AW703815.1|AW703815
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|151400274|gb|EV270088.1|EV270088
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|17964468|gb|BM271203.1|BM271203
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|5677258|gb|AI938388.1|AI938388
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTTAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|31464033|gb|CD406061.1|CD406061
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|192308445|gb|FK002817.1|FK002817
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|31312516|gb|CD397719.1|CD397719
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|21600407|gb|BQ610738.1|BQ610738
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|254325850|gb|GR838731.1|GR838731
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|192327100|gb|FK015492.1|FK015492
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|207830383|gb|GD802397.1|GD802397
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACA
EST: gi|18692955|gb|BM521803.1|BM521803
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|254324568|gb|GR833993.1|GR833993
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|31469700|gb|CD411728.1|CD411728
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|208150579|gb|GD945108.1|GD945108
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAA                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|192310362|gb|FK002242.1|FK002242
EST:     GCTATCTCGTTTCCGTTGATTCCCACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|192323685|gb|FK015991.1|FK015991
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|31473931|gb|CD415959.1|CD415959
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|151399653|gb|EV269524.1|EV269524
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|18848468|gb|BM567685.1|BM567685
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
EST: gi|192324854|gb|FK016070.1|FK016070
EST:     GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAG                         CTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA
genomic: GCTATCTCGTTTCCGTTGATTCCTACATGAACTTGCAGgttatatatc ... atctctgtagCTGGCCAACACTGAAGAGTACATTGAGGGACAGTTTACTGGAAATTTGGGA