1 5' 3' | 2 5' 3' | 3 5' 3' |
GGATGAGCTTGGTGTGCCATTGTCTCAGCTTGCGATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtcttcgctactggatttatttaccgttaagaagaagagtgattgcttatctgttgttgaaatgtctattgcattgtggtgagaaaataagct...
species | Glycine max |
transcript | GLYMA20G19000.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|10253010|gb|BE820776.1|BE820776
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|6951390|gb|AW423458.1|AW423458
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: AAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|192316315|gb|FK011674.1|FK011674
genomic: AAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|15203251|gb|BI426019.1|BI426019
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|209717858|gb|BW668997.1|BW668997
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|51341740|gb|CO983057.1|CO983057
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|16344418|gb|BI970013.1|BI970013
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|7924550|gb|AW830576.1|AW830576
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTTATACTAATGTCTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAACGCAATCCATGTCATTEST: gi|23731385|gb|BU763810.1|BU763810
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGANAGCAATCGATGTCEST: gi|208252994|gb|GE051528.1|GE051528
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTC
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|17402081|gb|BM178863.1|BM178863
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|9819631|gb|BE555144.1|BE555144
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGANAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|19934613|gb|BQ079643.1|BQ079643
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|6727056|gb|AW311410.1|AW311410
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|151413226|gb|EV283034.1|EV283034
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: GCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|7029551|gb|AW459392.1|AW459392
genomic: GCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTTEST: gi|209726692|gb|BW654821.1|BW654821
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
EST: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAG ATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
genomic: CTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtc ... ttttgctcagATTCAAGAGAACATGAAAGCAATCGATGTCATTCCATTACTGACTCCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGAGCTTGGTGTGCCATTGTCTCAGCTTGCGATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtcttcgctactggatttatttaccgttaagaagaagagtgattgcttatctgttgttgaaatgtctattgcattgtggtgagaaaataagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaataa