Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatttaatcttccttcctttcagtttccccttatatttgaaagtatatattattatgattctctctttatatatgcttcaattataaaaaaacttcatcctggtgttcataaatttgcaatggattttcctgcag

Basic information

species Glycine max
transcript GLYMA20G18440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G18440.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G09760.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatttaatcttccttcc--tttcagtttccccttatatttgaaag-tatatattattatgattctctctttatatatgcttcaattataaaaaaacttcatcctggtgttcataaatttgcaatggattttcctgcag
                                                           | ||||||||  ||||||| |||||||||||||||||||||||     ||||  | || ||  |  |||  |||||| ||| | | ||  || |  | | | |  |||| |  |  |  | |||| |   |        |  || | |  ||| ||                             
-----------------------------------------------------------GTAACAAGATTCCTGTAATCGAAAACTTGGGTGCTACTGAGgt-----atttcttttttctatcgattttcgtttcctctt-tgtctgttagctgaagaatttgttgatgcggttgtattgtatgttctta--------agtctgcctgttgg-gt-----------------------------

upper sequence: GLYMA20G18440.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0150g00590.t01 (Vitis vinifera), 5'ss of exon 1
GATTTGGAAAAGCCCTCATTTCTTCAACACGATTAAAGAGCGTGAGTTAGATCTCAGAGGCAAC--AAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaa-aatttaatcttccttcctttcagtttccccttatatttgaaagtatatattattatgattctctctttatatatgcttcaattataaaaaaacttcatcctggtgttcataaatttgcaatggattttcctgcag
                    |      |      | |||  |||||    |   ||||    |      | |||  | |||     |||   ||| |    || || | ||||  ||||||      |||   | ||  |     ||  |  | || |||      |||||    | ||   | |  | |   |||   |||   |      |   ||  || || |                 
--------------------TGGCTGCCGAAGAAAGAGATGGTGAGGCTCACTGCAGACCTGATTTGGAAAAGCCCTCATTT----CTTCAATGCCATCAGGGAGCGAGAATTGGATCTTCGAGgtattccagt-cctgtcccgctttcatttctacatttcctctattctaa--tcattccttcccccaaactaacggaaccctagttcacttcacacgaagttac-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294286|gb|FG986375.1|FG986375
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|192326367|gb|FK017669.1|FK017669
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|19054300|gb|BM732967.1|BM732967
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|7588075|gb|AW703878.1|AW703878
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|192305354|gb|FG994036.1|FG994036
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|23728179|gb|BU762135.1|BU762135
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|298192581|gb|HO033015.1|HO033015
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
EST: gi|151394202|gb|EV264073.1|EV264073
EST:     ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAG                         GACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA
genomic: ATCTCAGAGGCAACAAGATAGCTGTAATTGAAAACTTGGGTGCTACTGAGgtgcaaaatt ... tttcctgcagGACCAATTTGACACAATAGACTTATCTGACAATGAGATTGTTAAACTTGAA