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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTTCCACCCATACAGGCTAATGAGCTGCCGCTTTTGGAGTGTACAGTGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctgatttacttgttttagtttctgggatattgctggcagaacttaagtgttgagatttatttaacctgtggtcacattttgtatggtgttaat...

Basic information

species Glycine max
transcript GLYMA20G18290.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199395|gb|HO042758.1|HO042758
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|192329677|gb|FK022943.1|FK022943
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|24136395|gb|BU926905.1|BU926905
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|10845842|gb|BF071193.1|BF071193
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATNNTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|7327188|gb|AW621050.1|AW621050
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|209702527|gb|BW667160.1|BW667160
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|298180474|gb|HO022027.1|HO022027
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|209727621|gb|BW663781.1|BW663781
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|15285733|gb|BI469624.1|BI469624
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|27424259|gb|CA935779.1|CA935779
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|14012066|gb|BG726997.1|BG726997
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|209708643|gb|BW678820.1|BW678820
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: gi|298192011|gb|HO036093.1|HO036093
EST:     TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG                         ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGATTTCCACCCATACAGGCTAATGAGCTGCCGCTTTTGGAGTGTACAGTGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctgatttacttgttttagtttctgggatattgctggcagaacttaagtgttgagatttatttaacctgtggtcacattttgtatggtgttaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT