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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAAGGATAGTCTTGGTGAAGAAGTTGTGAAACCATATACTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgccactatttttttttttttctcagtgtttgattattgtcaatttattatttttaactatagatattgacttttgctacctgtattgtttgtataataattag

Basic information

species Glycine max
transcript GLYMA20G05640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G05640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0009g01710.t01 (Vitis vinifera), 5'ss of exon 3
AGGGAAGGATAGTCTTGGTGAAGAAGTTGTGAAACCATATACTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgccact-atttttttttttttctcagtgtttgattattgtcaatttattatttttaactatagatattgacttttgctacctgtattgtttgtataataattag
 || |||||||||||||||||||| ||||| |||||||||||||| || || || ||| | ||| |||||||||||||| | ||| | |||||| ||   |||| |  | ||    | | |   |      | ||  |  |||| |  ||||   |  |   | |||| |||   | |   ||  | | |            
GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaacactcaaatattccaatgttttgatacactgtcatcatttatttctctttttccccctt---ttttgattttaatttctcttaagggtag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213597036|gb|DB966345.1|DB966345
EST:     CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAG                         ATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
genomic: CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgcc ... taataattagATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
EST: gi|193396351|gb|FK360985.1|FK360985
EST:     CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAG                         ATGTATCCACAAGGACGGATGTCTCATCACT
genomic: CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgcc ... taataattagATGTATCCACAAGGACGGATGTCTCATCACT
EST: gi|151395866|gb|EV265743.1|EV265743
EST:     CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAG                         ATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
genomic: CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgcc ... taataattagATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
EST: gi|254343624|gb|GR857380.1|GR857380
EST:     CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAG                         ATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
genomic: CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgcc ... taataattagATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
EST: gi|192309127|gb|FG999074.1|FG999074
EST:     CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAG                         ATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
genomic: CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgcc ... taataattagATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
EST: gi|151412854|gb|EV282666.1|EV282666
EST:     CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAG                         ATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT
genomic: CTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgcc ... taataattagATGTATCCACAAGGACGGATGTCTCATCACTTTAGGGAGATACGTGAAGGT