1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttccgtctccataatctcataccttacctctggaatttttcttgtcatctcatgatgttaacaacttaacctgcag
species | Glycine max |
transcript | GLYMA19G43690.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATA AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTAEST: gi|15337669|gb|BI498325.1|BI498325
genomic: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttcc ... taacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
EST: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATA AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTAEST: gi|192303316|gb|FG997402.1|FG997402
genomic: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttcc ... taacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
EST: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATA AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
genomic: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttcc ... taacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttccgtctccataatctcataccttacctctggaatttttcttgtcatctcatgatgttaacaacttaacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG