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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatcttaattaagtttcaaattagccaaaaaaatatcttatcttaattaattaatgcgaattgaccgtgaggttgttatttttttatttacag

Basic information

species Glycine max
transcript GLYMA19G43450.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43450.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 4
AATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatcttaattaagt----ttcaaattagccaaaaaaatatctta--tcttaattaattaatgcgaattgaccgtgaggttgttatttttttatttacag-------
 ||  |||| ||||| ||||||||| |||| |||||||||||||| | ||| ||||| || ||||||| || |  | |   |     |||   |    |     || |   |  | || |  | ||     || || | |    |  | |  ||  || ||  |  |       
GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTGgttagtcatatatacttgctgcaactcatgatcattatggttatgttcaaaattttcaccacttttgctgacttaatctcttgtatttgcttgattaatcaatggcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334950|gb|GR844735.1|GR844735
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAG                         CACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
EST: gi|192306533|gb|FG997217.1|FG997217
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAG                         CACCAAGAGCAGTGCAAA-GTGCA-GA-CAGA-GCTAGAG-CAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
EST: gi|254318334|gb|GR832502.1|GR832502
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAG                         CACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
EST: gi|192306534|gb|FG997218.1|FG997218
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGCGGCAATCGGGCTAG                         CACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
EST: gi|57575143|gb|CX548118.1|CX548118
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAG                         CACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAGAGGCAAATTTGTA