Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctctatattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag

Basic information

species Glycine max
transcript GLYMA19G43210.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctct-atattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag
| |||| |||||| ||||| || ||| |||||||||| ||||| |  ||  |||| ||||||||||| |||||||||||||||||||| ||| | ||||||| || |     |  | ||       ||    ||   | |||   || |  ||   |  ||||   |||  |||                                                       
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcatgcag-----------------------------------------------------

upper sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctctatattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag
| || |  | ||| |||||||| |||||||||||||| ||||| || ||  |||||||||| || || |||||| ||||||||||||| ||| | ||||||| || | |     |   ||  ||||| |      |   | |  | | | | | |  || |     ||| ||  |                                                     
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatactttt-ctgtcgttggttttagtttatctttaacgataacttcatttatggatacag-------------------------------------------------

upper sequence: GLYMA19G43210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 3
AGCACAGAAGCATAATGAAATTTTACACTTCTTGGGTTGATACAGCGAACAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAgtgagttccctccattttcaaccttttgccactcctctatattatatttgtatgatcattatcctttttgtgcttttgagaagttttgttattttttcttcttttatttattttaattatcacaatag
| ||||  | ||| ||||| || || ||||||||||||||||| || || || || ||||| ||||| ||||| |||||||||||||| || || || |||| |||  |||| | |||     | | | || |    ||| |           | || ||    |||||     ||| |   | |||  |   ||||||   |||  | ||  ||             
AACACAATAACATTATGAAGTTCTATACTTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAGATGTTCACTTCTGGGACTCTCAGGCAgtaagtatcctcgaattt-----tctggtcattttagtatgtg----------ggtcgttgagatttttaccggtttaaatgggttttcttgcttttctatgtttgatcatgatag------------