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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaacaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactccttgc...

Basic information

species Glycine max
transcript GLYMA19G43190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 2
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagt-caacaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactccttgc--
||| || || || ||||| ||||| ||||| ||||| ||  | || || || |   | ||    ||||||||||| |||||||| |||||||| ||||||||  |  |  |  ||  | |        |    |  | || | | | |    | |   |  |  |||| |    | || |  ||| ||  | ||| || |   
CCGCACCCACTTCGGAGGAGGCAAGTCCACCGGATTCGGACTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcctctcttgtctcgttgatctcgccctgctcttgatagtttagtttaatcgtgatgctatgctg---aaatctgaacaatctagtactactagagt

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 5'ss of exon 2
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaacaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactcc-ttgc-
||| || || || ||||| ||||| ||||| ||||| ||  | || || || |   | ||    ||||||||||| |||||||| |||||||| ||||||||  |    ||     || ||| |       |   | |   || |||||| |     |||   ||  | | |     || | |    | |  |||  |||  
CCGCACCCACTTCGGAGGCGGCAAGTCCACCGGATTCGGCCTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcacgcatcgctcagaactttgtgccatcactct--gcattctgaatttgggattgagctagcggaatggtggttgttcgcctcagtgctcggttgtg

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G091383_T01 (Zea mays), 5'ss of exon 2
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaacaattaacacaacc--tctgcttgtttttttttacaatctgaaat---cacatttgttttatggtatt-tagatttttacagtcctgcactccttgc
||| || || || ||||| ||||| || || ||||| ||| | || || || |  || ||    ||||||||||  |||||||| |||||||||||||||||  | |  |  ||    |  ||  | | ||   |  |  ||  | ||  |  |   ||  ||   | ||  |  |  || |   | | ||  |    ||      
CCGCACCCACTTCGGAGGCGGCAAGTCTACCGGATTCGGTCTCATCTACGACAACGTCGACTCAGCCAAGAAGTTCGAGCCCAAGTACAGGCTTATCAGGgtatg-cgtctcttgctcctcccgtttttctcactcgtaattggattcataggtctccatgttgaatatactgcctggtatacgctgaaagctcaaagctt-----

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 3
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaacaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactccttgc----------------------------------------------------------------------------------------------------
| |||| || ||||||||||| |||||  | || ||||||||||| |||||||| || ||||  || ||||||| ||| ||||||||||| ||||||||||| | |      |  || |    |    ||||| | | || | |     | | ||    || |||   |  |||   ||   || | |||     ||                                                                                                       
CAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACAGACTTATCAGGgtaaatgctttttccactcttgtttccattgttatatattgctactcacattgac--ccgtctta-aatcattactcttgctcattactgtttgtctgaaaattataagctatgtgataagtttcggactttatatcgtattgcacttggtgttctctgcatctttatacttaaacatgctttgtctatgtggttggcag

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 3
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaaca--attaacacaacctctgcttg---tttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcact----ccttgc-------------------------------------------
| |||| || ||||||||||| |||||  |||||| ||||||||| |||||||| || ||||| || ||||||| |||||| || ||||| ||||||||||| | |   |   | |      |    |   |     ||||  ||  | | |  | ||    ||  | | ||||  || |||||| || |   |||  |    |  ||                                            
CAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactct-tggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacag

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0151g00900.t01 (Vitis vinifera), 5'ss of exon 3
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaacaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttag--atttttacagtcctgcactccttgc----
||| || ||||||||||| || ||||| ||||| || ||||||||||||||| | || || ||||| ||||| ||||| || || ||  |||| |||||||| |         |   |     |||| |  | | | ||  ||||    |     ||| || |   || | |  |  |  ||     |  |    |    ||    
CCGCACCCATTTTGGAGGGGGGAAATCTACTGGTTTCGGTTTGATTTATGATTCCGTTGAAAATGCAAAGAAATATGAACCAAAGTATCGGCTCATCAGGgtaatctgctctctgtta-----tctgttcatatatctt-gcaattcatacctgtattggtgtgtggggactggggaaccttctggatgttattgttaaggcctta

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtca-acaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactccttgc--
||| || || ||||||||||| || || |||||||||||||||||||||||| |||| |||||||| |||||||| ||||| || |||||||| |||||||| | | | | || |  |     |||   ||| |||  |  |  |||  ||   |   |   | |  ||  | |   |||||  | |       || ||    
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctc-atttgatttcatcaagcatc--aagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S13_236V6.1 (Physcomitrella patens), 5'ss of exon 3
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcag-----tcaacaattaacacaacc--tctgcttgtttttttttacaatctgaaatcacatttgttttatg-----gtatttagatttttacagtcctgcactc-cttgc------------------------------------------
| |||| ||||| ||||||||||| ||||||||||||||| | || || ||  |  | ||   ||| ||||| || |||||||| |||||||| || ||||| ||     || | |  | |      |   | |||      || ||  ||  | ||  ||  ||  |||| ||      || || | |  ||    |  ||   ||  |||                                           
CAGAACGCATTTCGGAGGTGGCAAGTCCACTGGATTTGGTCTCATCTACGACTCCATTGACTCTGCTAAGAAATACGAGCCCAAGTACAGGCTCATTAGGgtgagattcatcgagacctgattggttcatccggctctgaggttcttgaaaggtcaaggcatgttatttttttgttgaaataatttgctgattggtttggtgtgttcatttgtcaagatctttagtattgaggatagtttaatggttatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888756|gb|BQ741969.1|BQ741969
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|7795416|gb|AW780741.1|AW780741
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298195443|gb|HO039274.1|HO039274
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|151411432|gb|EV281243.1|EV281243
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298197162|gb|HO041905.1|HO041905
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|7285619|gb|AW598106.1|AW598106
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|16342193|gb|BI967788.1|BI967788
EST:     CCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: CCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298188537|gb|HO035230.1|HO035230
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|254329668|gb|GR839221.1|GR839221
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192316519|gb|FK006782.1|FK006782
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|213589380|gb|DB961713.1|DB961713
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209699846|gb|BW652512.1|BW652512
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|213608688|gb|DB968975.1|DB968975
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|214005555|gb|DB989383.1|DB989383
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192321822|gb|FK013214.1|FK013214
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298188446|gb|HO035139.1|HO035139
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209713764|gb|BW679427.1|BW679427
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|42723225|gb|CK769124.1|CK769124
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209713765|gb|BW679428.1|BW679428
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192296602|gb|FG992348.1|FG992348
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|11687434|gb|BF595110.1|BF595110
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209719764|gb|BW674915.1|BW674915
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|16997148|gb|BM086520.1|BM086520
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298193142|gb|HO033576.1|HO033576
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCCTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192311311|gb|FK003782.1|FK003782
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209699645|gb|BW652056.1|BW652056
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192323416|gb|FK015302.1|FK015302
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298183048|gb|HO028311.1|HO028311
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGATA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192296601|gb|FG992347.1|FG992347
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298177156|gb|HO027051.1|HO027051
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192326448|gb|FK015935.1|FK015935
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|193330049|gb|FK295789.1|FK295789
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGC
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGC
EST: gi|11689424|gb|BF597100.1|BF597100
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCATG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|214007771|gb|DB986137.1|DB986137
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209714321|gb|BW665583.1|BW665583
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|209714320|gb|BW665582.1|BW665582
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|151407879|gb|EV277694.1|EV277694
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|213606613|gb|DB972534.1|DB972534
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298187430|gb|HO034579.1|HO034579
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192326464|gb|FK017721.1|FK017721
EST:     ATACAGAGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGGAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|27424572|gb|CA936092.1|CA936092
EST:     AGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: AGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|192321821|gb|FK013213.1|FK013213
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|12774771|gb|BG239698.1|BG239698
EST:     ATACAGTGGAGAATGCCAA-AAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|6719340|gb|AW306987.1|AW306987
EST:     CCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: CCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|254329667|gb|GR839220.1|GR839220
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|213596459|gb|DB962047.1|DB962047
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|13788328|gb|BG650920.1|BG650920
EST:     ATACAGTGGAAAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|37994884|gb|CF806473.1|CF806473
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
EST: gi|208302176|gb|GE098695.1|GE098695
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGG
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGG
EST: gi|15814867|gb|BI787142.1|BI787142
EST:     ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGG                         AACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA
genomic: ATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaac ... attatatcagAACGGCCTTGACACCAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGAACACATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAGAATGCCAAGAAGTATGAGCCCAAATACAGGCTTATCAGGgtcagtcaacaattaacacaacctctgcttgtttttttttacaatctgaaatcacatttgttttatggtatttagatttttacagtcctgcactccttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT