Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTGGACGTTTTATCAGATTACAATGTTCTGACTTGCGAATGAGAATTCCTTTTGAGAATCTTCCTTCTTGTGACAGgtgctcgagctatagtgttcttatggggcacccttttgttttagcgaggaataaaacaaaatggtttctataagtgtccaaataatgtgttcattgatgcag

Basic information

species Glycine max
transcript GLYMA19G42670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42670.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g29230.1 (Oryza sativa), 5'ss of exon 9
---------------------CAGTTGGACGTTTTATCAGATTACAATGTTCTGACTTGCGAATGAGAATTCCTTTTGAGAATCTTCCTTCTTGTGACAGgtgctcgagctatagtgttctt---atggggcacccttttgttttagcgaggaataaaacaaaatggtttctataagtgtccaaataatgtgttca-ttgatgcag-
                     | |||| | | ||||| ||| | ||||| || ||  || |||||||||| |||| |||||||||||| |||||||||||||     |  |||  | |  ||   ||   | |   |||| ||  |   ||   || | |||  || |    | || | ||   | ||    | |      ||||  
TGTACATTACCTTTGTGTTAGCTGTTGCAAGATTTATTAGACTGCAATGCTCAGATCTGAGAATGAGAATACCTTATGAGAATCTTCCATCTTGTGACAGgtatgt-acttatgatatattttagataatggaagtttttattgaactcagt--tacatcaaggtgat----acaattatcttgagaacacttccggcctctgcata

upper sequence: GLYMA19G42670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g00180.t01 (Vitis vinifera), 5'ss of exon 6
---------------------CAGTTGGACGTTTTATCAGATTACAATGTTCTGACTTGCGAATGAGAATTCCTTTTGAGAATCTTCCTTCTTGTGACAGgtgctcgagctatagtgttcttatggggcacccttttgttt--tagcgaggaataaaacaaaatggtttctataagtgtccaaataatgtgttcattgatgcag
                     | ||||| || || |||||| | || ||||| ||| || |||||||||| || |||||||||||||| || ||||||||||   | |  |  |    |  |    | |||    | || |   | | || |||      ||    | |  |||  ||   ||    ||| |   ||| |    
TCTACATTACTTTTGTGCTAGCTGTTGGCCGCTTCATCAGACTGCAGTGTTCAGACCTGAGAATGAGAATACCCTTTGAGAATCTTCCCTCCTGTGACAGgtaagcaattttcatgtctgctgcatgtcactagctcgtctgacacccagtaatgttgtgaataattctgcatatctg---aacctctgtttgtgttgctctt-