1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGTTAAGCGTTGATGATTCTCTTGTATGTTCCTTTGAGATACTGAAACCCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatcaacaatcagctgttgtatttttttagagtattgtataattttcaaacgtttgtgcatatcagtatcttatgcaactttttccgcag
species | Glycine max |
transcript | GLYMA19G42050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAG CCACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAATEST: gi|8826801|gb|BE210531.1|BE210531
genomic: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatca ... ttttccgcagCCACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAAT
EST: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAG CCAACCCAA-CTCGGAAAGATAEST: gi|151402298|gb|EV272111.1|EV272111
genomic: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatca ... ttttccgcagCCA-CCCAAACTCGGAAAGATA
EST: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAA-TGAATTTTAAGAAG CCACCCAAACTCGGAA-GATATAGTA-TTGGCAA-GATTT-CG-TTCAA-TEST: gi|213604970|gb|DB982290.1|DB982290
genomic: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatca ... ttttccgcagCCACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAAT
EST: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAG CCACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAATEST: gi|209704345|gb|BW678354.1|BW678354
genomic: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatca ... ttttccgcagCCACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAAT
EST: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAG CAACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAAT
genomic: CCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatca ... ttttccgcagCCACCCAAACTCGGAAAGATATAGTAATTGGCAAAGATTTTCGGTTCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTAAGCGTTGATGATTCTCTTGTATGTTCCTTTGAGATACTGAAACCCGCTGATAGAGCATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGgtaaatatcaacaatcagctgttgtatttttttagagtattgtataattttcaaacgtttgtgcatatcagtatcttatgcaactttttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG