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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACAGAGACCGGACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttcccttctttttccactaacatatactgtactgtgactggaatgtagttcgaaataatttgactactgtactgtctcattttctctctgctg...

Basic information

species Glycine max
transcript GLYMA19G41420.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 3
GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACAGAGACCGGACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttcc----cttctttttccactaacatatactgtactgtgactgga-atgtagttcgaaataatttgactactgtactgtctcattttctctctgctg
|| |||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || || ||||| ||||||||||| ||||| |||||||||||  | |     |   ||  |    |     ||    ||   || | ||| |||   ||        |||   |  |  ||  | || |    |||      
GAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAGgtatatatgcttgagcacattccttaggttttggatctcatagcatgtcaggagatgccatttttgcctttttaggtgattaacattttcttgggttcta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616919|gb|DB959231.1|DB959231
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|13252730|gb|BG363633.1|BG363633
EST:     GAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|15286620|gb|BI470511.1|BI470511
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|254328746|gb|GR833118.1|GR833118
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|27809424|gb|CB063846.1|CB063846
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCA
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCA
EST: gi|209725616|gb|BW663105.1|BW663105
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|6913877|gb|AW395407.1|AW395407
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|213591319|gb|DB973808.1|DB973808
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|298165875|gb|HO008846.1|HO008846
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|15814589|gb|BI786864.1|BI786864
EST:     GTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT