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GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACAGAGACCGGACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttcccttctttttccactaacatatactgtactgtgactggaatgtagttcgaaataatttgactactgtactgtctcattttctctctgctg...
species | Glycine max |
transcript | GLYMA19G41420.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|13252730|gb|BG363633.1|BG363633
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|15286620|gb|BI470511.1|BI470511
genomic: GAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|254328746|gb|GR833118.1|GR833118
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|27809424|gb|CB063846.1|CB063846
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCAEST: gi|209725616|gb|BW663105.1|BW663105
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCA
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|6913877|gb|AW395407.1|AW395407
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|213591319|gb|DB973808.1|DB973808
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|298165875|gb|HO008846.1|HO008846
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTEST: gi|15814589|gb|BI786864.1|BI786864
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: GTCAACCGAAGCAG ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGGAAGCCACCGTTGTCGATGGTAACGGAACAGAGACCGGACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttcccttctttttccactaacatatactgtactgtgactggaatgtagttcgaaataatttgactactgtactgtctcattttctctctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctgc