1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAAATACATGGAAAAACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctctttaccttacgcatgcttgctttaattacttctggttctggagattacaagatatgcttactcaaatcttgtgtgttctcattttttgcatatattttcttgtgtgcacag
species | Glycine max |
transcript | GLYMA19G41030.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTTEST: gi|14258997|gb|BG881905.1|BG881905
genomic: ACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTT
EST: ACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTTEST: gi|7640347|gb|AW734650.1|AW734650
genomic: ACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTT
EST: GGATATTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTTEST: gi|209726664|gb|BW666583.1|BW666583
genomic: GGATATTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTT
EST: ACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTG ATTTCTTTAACTGGAACAGAGTTAT
genomic: ACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctct ... gtgtgcacagATTTCTTTAACTGGAACAGAGTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAAATACATGGAAAAACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGgtttttctctttaccttacgcatgcttgctttaattacttctggttctggagattacaagatatgcttactcaaatcttgtgtgttctcattttttgcatatattttcttgtgtgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA