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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctcaatgcaattattttcattccag

Basic information

species Glycine max
transcript GLYMA19G40520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgta--aaacttac--------ttgaatttgtgc----acatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatg-ccttag-atgtgaatatattattcagtttttctcaatgcaa--ttattttcattccag---------------------
||||||||    ||| | |||||  |||| ||||| || || || ||||| || ||||||||||||||||| ||||| ||||||||||||   | |||          || | |||| |      | || |   ||  |  || |||||| ||     |||  |   ||    |  || ||| |||||  |     | |   |  ||||  ||     ||| ||  | || |||  | |                       
GTTGAGCTGTGTACTATTGATGGTTTGGTTAAGGAAAGCACTCAGTGTGCCCCTAATGGATACTATTTTATCCCAGTCTATGACAAGgtattgatcttgtgcttagcatttattttgggttttggccttgataaatgctctggaaacttccgtaaaattaagaaagaaaacataactagatgaccttattactctgacaagattctcagcattatcatatggaagataatattctgttctttttgttgttttcacgccacag

upper sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G014788_T01 (Zea mays), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtct-tcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctcaatgcaattattttcattccag
||||||||    ||||| |||||  |||| || || || ||||| |||||||| ||||||||||||||||| || || ||||| ||||||    |   |    ||| ||   | || ||  |  | |   | ||| | | | |  | | |  |      |||| |  |   ||  | ||      |    | |                               
GTTGAGCTCTGCACTGTTGATGGTTTGGTTAAAGAAAGCACACAGTGTGCTCCTAATGGATACTATTTTATCCCCGTCTATGATAAGgta----tctttgtgttttttgtttactttag--ttctggattatcttttatgtgttctcattttatttacacatacaattttattgcaagtaggagcaaaggtta-------------------------------

upper sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctcaatgcaattattttcattccag
|||||||||||||| || |||||| ||||||| || || ||||| ||||| |||||||| |||||||| || ||||||||||||||||||    | |       |  | | | |||  |       ||  ||    ||| | |||  || | | | |  || | ||||| ||      | |                                          
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgta---ttca-------tcatacccttttcgg-------ggttaatcggtgt-tgcatttattctgcaagtgatttctatgctttcttctcgtag-----------------------------------------

upper sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctcaatgcaattattttcattccag
||||||||||  ||  | |||||| |||| ||||| ||||| || ||||| |||||||| |||||||| ||||| || ||||||||||||    | |    |   ||||     ||  ||||   || | |     |||  |      |    |||  |  | || |   | | |     |  ||                                      
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctctcatcaataactaacatttcaatcaaacaaagaagtaaa------------------------------------

upper sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S269_44V6.1 (Physcomitrella patens), 5'ss of exon 4
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctca--atgcaattattttca-ttccag------------------------------------------
|| ||||| |  ||  | || ||||| || |||||||| || |||||||| || ||||| ||||||||| | ||||| ||||||||||||    || |  ||  |||| |    | |    | ||   | | | | |   | | |   | || ||  |  | |   |  |||       |  ||  |||  | | ||        || ||||| || || ||||||                                          
GTAGAGCTCCGGACATTAGACGGACTTGTGAAGGATAGCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttgcaagatcttgtccttcatcattgtttttactgtaccattttcatccttgttttcataaaagttttttcttttctttttccccacaatgctatagaatattctatgtggtgaaattagttacaattccagagctatccatgagtacaataactacattccgtgatattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614320|gb|DB964952.1|DB964952
EST:     GAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAG                         GGTTCCTTTGTAATTAAAATTAATGGACCTCCAGGATGGACATGGGATCCA
genomic: GAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaactta ... ttcattccagGGTTCCTTTGTAATTAAAATTAATGGACCTCCAGGATGGACATGGGATCCA