Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAGgtttgttcttcatttttagttcttaaaaactcgtggtttatcttcttataaagtagttcttttgaggatgacattcaaatttcaatacttatattttggt...

Basic information

species Glycine max
transcript GLYMA19G40480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40480.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g19510.1 (Oryza sativa), 5'ss of exon 4
AGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAGgttt--gttcttcatttttagttcttaaaaactcgtggtttatcttcttataaagtagttcttttgaggatgacattcaaatttcaatacttatattttggt
|| ||  | || ||||| ||| | || || ||||||||| | |||||||| ||||||||||| || || || |||||||||||||||||||||||     |  |  ||     | | |   | |  |      ||| | ||     | ||| |          ||  |   |    | | |    | ||  ||  
AGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGgtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactg--

upper sequence: GLYMA19G40480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 5'ss of exon 4
AGAATAGTACGTTGTGGGGGAGCTGTAGATGATGATATGTCTAACATCATAGTTGCCCAGCTTCTTTACCTTGATGCCATCGATCCTAACAAGgtttgttcttcatttttagttcttaaaaactcgtggtttatcttcttataaagtagttcttttgaggatgac-attcaaatttcaatac-ttatattttggt---
|||||| | || ||||| |||||||| |||||||||||| | ||||||||||| || |||||||| || ||||||||  | |||||| |||||||  ||     |  || || | || |    || |  |||   |   |  ||| |    || ||    || || |||   ||| | ||   | | |   ||     
AGAATAATCCGATGTGGTGGAGCTGTTGATGATGATATGGCAAACATCATAGTGGCTCAGCTTCTCTATCTTGATGCTGTTGATCCTGACAAGgtccgtatggtagctt-agctgttgatg-ttcttatttt---tgtatgcaaattttccctctttgttattactattattattacgatttatcacaaaatgaacat