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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACAGTCAGAAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaagtgaaaccattgcatcaaaacttgtcctttaaaggtttaaaatgatggattttgatgggaatcagtcaagattggatactgttacagaattttttg...

Basic information

species Glycine max
transcript GLYMA19G37610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37610.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
TGCTACAGTCAGAAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaagtga-aaccattgcatcaaaacttgt--cctttaaaggtttaaaatgatggattttgatgggaatcagtcaagattg-gatactgttacagaattttttg
  | |||| ||||  |||   ||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||  |  |||||||  |  ||||  | |    ||||||   ||  | || |||   | |||||        |     ||||      | | |||   | |     |  | || 
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagcaatgaccaaagta----aacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgttctaagtgttc

upper sequence: GLYMA19G37610.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 3
TGCTACAGTCAGAAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAA---GGCAGCGTCTTCAGCAGTCAAGTAGGgtaagtga--aaccattgcatcaaaacttgtcctttaaaggtttaaaatgatggattttgatgggaatcagtcaagattggatactg--ttacagaattttttg
    |||   ||   |||||  ||||||||||| ||||| || ||||| ||||| ||||| |||||||||||     |||| |||||||||||||| || ||||| |||||  |   |         |   |    || |    | | |   | ||     || | |  ||||   ||||    | |  |  |  ||||  |     
---AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtgatgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg----