Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGCCCATGCTCATGCTTGGTATTACTGTTGGTGTCGTCCTCAGTGTTGTCTTCCCCTACTGGCTCATCACCGTTCTTATTATTATTCTCTTCATTGgtcagtgtctctgtttgttatctgtattagcagaaaagtttacttgcaaaccaaaccatgttttggataaaccagttcttagttggtctatgctgaaaaatgatggaataggttctttcactttttgacag

Basic information

species Glycine max
transcript GLYMA19G37360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g51650.1 (Oryza sativa), 5'ss of exon 3
TTTCAGCCCATGCTCATGCTTGGTATTACTGTTGGTGTCGTCCTCAGTGTTGTCTTCCCCTACTGGCTCATCACCGTTCTTATTATTATTCTCTTCATTGgtcagtgtctctgtttgttatctgtattagcagaaaagtttacttgcaaaccaaaccatgttttggataaaccagttcttagttggtctatgctgaaaaatgatggaataggttctttcactttttgacag
|| ||||||||||||||||| || || ||  | || ||||  ||||| ||  ||||||||||||||||||||||||| || || || || |||||||| |||  ||    ||      | | |   | ||||  |       |||      |   |  |  ||||  |   |      | || | |   |   |||    || | |  |  | |   ||  ||   |    
TTCCAGCCCATGCTCATGCTCGGGATCACAATCGGAGTCGAGCTCAGCGTCATCTTCCCCTACTGGCTCATCACCGTCCTCATCATAATCCTCTTCATAGgtttgtacagctaacaaatgtgttgttaagcacgatctggcgcttttgtggcg--ctgtcctttgcgtgccctg----tgagatcgctgagattgatgtgtgtttgg-tgcgcttgatcgattgcag----

upper sequence: GLYMA19G37360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04230.t01 (Vitis vinifera), 5'ss of exon 3
TTTCAGCCCATGCTCATGCTTGGTATTACTGTTGGTGTCGTCCTCAGTGTTGTCTTCCCCTACTGGCTCATCACCGTTCTTATTATTATTCTCTTCATTGgtcagtgtctctgtttgttatctgtattagcagaaaagtttacttgcaaaccaaaccatgttttggataaaccagttcttagttggtctatgctgaaaaa----tgatggaataggttctttca--ctttttgacag-------------------
|| |||||||||||||||||||| || |||||||| || |  ||||||||||||||||| |||||||| || ||| | || || || ||||| ||||| |||  ||     | |      | | |   |     ||  |||  ||        || |      |    | | || || | | |  || |||| |   | |       |  |   | ||||||||   || ||||                      
TTCCAGCCCATGCTCATGCTTGGGATCACTGTTGGAGTAGCTCTCAGTGTTGTCTTCCCTTACTGGCTTATAACCATCCTCATCATCATTCTGTTCATGGgtgtgtcaaattctcatccctttattccaatgttaactttttttttttttatcaatcggtagatccccagatcatttgtca-tcagtatatgttacgataatctctgtcaagatgattctttcaaatttattgaataatttatgactctggatcag