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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttcatatctttactatctcagaactagtatgttatgtttacctgctgagtttgctgaaatttgttggtcgatttcaaattcttctctatggagt...

Basic information

species Glycine max
transcript GLYMA19G37230.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37230.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G53120.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttc--atatcttta-ctatctcagaactagtatgt-tatgtttacctgctgagtttgctgaaatttg--ttggtcgatttcaaattcttctctatggagt
 || |||||  |  |||||||| | |||||||||||||||||||| || ||| |||  || ||||| ||||||||  | || | |||||||||| ||  | |   | |  | | || | |    || |  |||   ||     ||   |      |||     || ||   ||     ||  | | |||     
CGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAATgtaagtctctaaaacagtcagttgtttctggatagctaagagtattactattaattgtagtcctaagaatggagcttcgttagttatgtgttgatat-tat-----

upper sequence: GLYMA19G37230.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G36680.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttcatatctttactatctcagaactagtatgttatg---tttacctgctgagtttgctgaaattt---gttggtcga--tttcaaattcttctctatggagt------
||| |||||| |  |||||||| | |||||||| |||||||||||||||||| |||| || ||||| |||||||  |||||||  |||||||||   | |  |    ||      | ||| | | ||| |   | || || ||   ||   |    |||   | || |  |  |||    || |||| |||    |      
TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgtttttgagatgattcagttttgtgctttttctttatatgttcattag

upper sequence: GLYMA19G37230.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04470.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttcatatctt---tactatc-tcagaactagtatgttatgtttacctgctgagtttgctgaaatttgttggtcgatttcaaattcttctctatggagt
  | |||||||| || ||||||||||||||||| ||||| ||  | || || || | |||||||||||| || || |||||||  |||||||||||   || ||   | ||  | ||   | |    |  | |  |||| |    | | |    ||     ||| |   | |  || ||  || ||      
CATCGATGAGTTACGAAAGCTTTTATCTGACAAGGATGCATACAACCAATTGTTACTTTCACTTGATCAAGTTAAAATTCAAAACAATgtaagtttggaatgttgttttctgccatctacattcacctaatcttattactttagaattcttgcaaaccaccttgctttctatacaactcagct-tacat---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454511|gb|AW185194.1|AW185194
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|151403740|gb|EV273550.1|EV273550
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|151404632|gb|EV274446.1|EV274446
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|254332260|gb|GR843844.1|GR843844
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|13563506|gb|BG551726.1|BG551726
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|21888222|gb|BQ741444.1|BQ741444
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG