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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTCGGCGTTGTTTGGGTTGTGGATGTTGATCCTCCGTTACACGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtgagtcacataacttgttattgtttttttttttctttttcgaattaagttattttttccttattacgtgattgtctggtgcag

Basic information

species Glycine max
transcript GLYMA19G34070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34070.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G131998_T01 (Zea mays), 5'ss of exon 3
CAAATTCGGCGTTGTTTGGGTTGTGGATGTTGATCCTCCGTTACACGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtg-----agtcacataacttgttattgtttttttttttctttttcgaatta---agttattttttccttattacgtgattgtctggtgcag--------------------------------------------------------------------------------------
    || | |  | |  |||  |    ||  || |     | |   ||||| ||||| |   |  |||||  ||||||||||||||||||||||||| ||||      |    |  || |   ||||     |  | |   |||   | |     | ||||||  |  | | |  || ||  | |||   |                                                                                       
TTGGTTAGTCACTTTGCGGGAAGATAGTGCAGAGCAGGTTTCAGTTGATAACAAACCTGTGTCAATTCTTGGTCACTATTGCAGTATCATCACTAGCATGgtatgaacaagttctaaattctgtattaccagtggtatggatttgtaagtcctacatttatttagtagtgaatgtgtaatcttttggcaaacccacaaagtctactacacttcagttttatttgtttctcctttcatgtcatgtataaccatgctttatcgtttgcttgggattgcag