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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAAAATCAATAGAGACAGTAGTTGATTGGATTACCAATGAAGTAAACATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaaactttgaaactgacttacctgcccttgtatctttatttgctcaaaatttgtttgcccataattttctaatcgtgaactcagttacagtgc...

Basic information

species Glycine max
transcript GLYMA19G33730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G33730.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0104g00120.t01 (Vitis vinifera), 5'ss of exon 3
TCAGAAAATCAATAGAGACAGTAGTTGATTGGATTACCAATGAAGTAAACATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaa--actttgaaactgacttacctgcccttgtatctttatttgctcaaaatttgtttgccca-taatttt---ctaatcgtgaactcagttacagtgc
 ||  | |||| |  ||||| |  | |||||| |||| |   | ||||| || |   | ||  | ||| | || ||||| ||||||||||| |||||||||||||||| |   ||||   | | | ||   ||   | |  |  ||| |   || || |||||      | ||||||    ||  |  ||  ||  | |   |   
ACAAGAGATCACTTAAGACATTGTTGGATTGGGTTACTAGCCATGTAAATATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgccttattgctttattatttaattctttg---tagccttgttaatacttccaattttgtccatttaataatttgtcactggttttggtcttggcttttg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331250|gb|FK023761.1|FK023761
EST:     ATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAG                         GGGTGGTGACTGGAATACTGGTGGTGGTTGTCACTTGGAAACATTACCCGA
genomic: ATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaa ... aatgtagcagGGGTGGTGACTGGAATACTGGTGGTGGTTGTCACTTGGAAACATTACCCGA