1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttttttaggtttacagagcagttggtgcacttgcatgttattggattccaaatttgtgccttttcagtgaccaaatacttttagttaaactgaaggattaaaagaaattattaaattgatctcacttgagaatgttttgttggttgatctcag
species | Glycine max |
transcript | GLYMA19G33650.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCAATTACACCCAGTTAACTGAGCCTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|9819421|gb|BE554934.1|BE554934
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|10709776|gb|BF009500.1|BF009500
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|13477752|gb|BG507504.1|BG507504
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298166996|gb|HO010435.1|HO010435
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|15663056|gb|BI700427.1|BI700427
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|9820763|gb|BE556273.1|BE556273
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|208167184|gb|GD963030.1|GD963030
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAEST: gi|19453002|gb|BM954412.1|BM954412
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAA
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298187303|gb|HO034452.1|HO034452
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298197094|gb|HO041837.1|HO041837
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298173934|gb|HO017270.1|HO017270
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298168059|gb|HO013322.1|HO013322
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA-AA-GACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298194861|gb|HO043333.1|HO043333
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298192806|gb|HO033240.1|HO033240
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298184031|gb|HO029244.1|HO029244
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|151397536|gb|EV267409.1|EV267409
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|192319134|gb|FK009102.1|FK009102
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG ATCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298166854|gb|HO010293.1|HO010293
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298166545|gb|HO009984.1|HO009984
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298195273|gb|HO043801.1|HO043801
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|298183535|gb|HO028748.1|HO028748
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATTTACAAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttttttaggtttacagagcagttggtgcacttgcatgttattggattccaaatttgtgccttttcagtgaccaaatacttttagttaaactgaaggattaaaagaaattattaaattgatctcacttgagaatgttttgttggttgatctcag
- - - - - - - - - - - - - - - - - GAGCTT