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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggttaatagaatttgttttcccttttataatctgttgactttgtttcaagcaacatggttgatagtcttccttctttcag

Basic information

species Glycine max
transcript GLYMA19G31770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 5
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggtta--atagaatttgttttcccttttataatctgttgactttgtttcaag-------caacatggttgatagtcttccttctttcag------
|| |||||||| || || ||||| ||||| |||||||||||||||||||| || ||| |||||||| | |||||||| ||  | || || |||||||| |||  |      |  |||| |||  | |       | || |    | |  | ||| |          |||||  ||   || | || ||   ||| |      
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAATTGACTGTCAATATTGTTGCTTTAGTTATCAATTTTGTCTCAGCATGCATCACAGgtgagggcaacattatagtattcatctgataccatgtatttccattaagtggttccccatgatctccaacacagt-actaatgtttctctcttccgtcacag

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 5
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggtta--atagaatttgttttcccttttataatctgttgactttgtttcaagcaacatggttgatagtcttccttctttcag------------
|| |||||||| || || ||||| ||||| |||||||||||||| ||||| || ||| |||||||| | || ||||| ||  | || || |||||||  |||  |      |  |||| |||  | |     | | || |    | |  | |||       |  |    || |||  |  |  |||               
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGgtgagggcaacattatagtattcatctgatgctatgtatttccattaagtggttctccatgatctccaagacagtactaatgttttgctcttccgtcacag

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggttaatagaatttgttttcccttttataatc-tgttgactttgtttcaagcaacatggttgatagtcttccttctttcag
|||||||| ||||| ||||||||||| || ||||| ||||| ||  | || |||||||| ||||||||| | ||||||||  | ||||| |||||||| |||  |   |  ||   |||       |   ||| |  |   |||   |    |  |   | |||   |  | || |   |||      
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccag---

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggtt--aatagaatttgttttcccttttataatctgttgactttgtttcaagcaacatggttgatagtcttccttctttcag
|||||||| || || || ||||| || || ||||| ||||| ||  | || |||||||||||||||||| | ||||||||  | ||||| ||||||||||||  ||    |  || | |       ||  |    || || | |  |      ||  || ||  || |||    | | |    ||||||
GGACGTGCTGTGTATATCAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACTGgtaagtaaaatcaaacacatgcacaattttcaccaatgatttttgaataacagtttcagtaa--tgattgt---tttgcaccttttcag

upper sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggttaatagaatttgttttccctttt---ataat-ctgttgactttg-tttcaagcaacatggttgatagtcttccttctttcag-------------------------------------------
|| ||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| ||||| || ||  | || ||  |||||||||||||||| |||  |||||   || ||  | || ||  | |||    || | || ||   | |  |||     || |||      |              |                                            
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178942|gb|HO024677.1|HO024677
EST:     AGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACCG                         GATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
genomic: AGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggt ... cttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG