Sequence
atgc intronic sequence ATGC exonic sequenceTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGgtaagagtatatttattctttatataaataatcaatcattggtgattctcccttaatattgtcattctggcacattcttttgaccctacttacattctat...
Basic information
species | Glycine max |
transcript | GLYMA19G30880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g16350.1 (Oryza sativa), 5'ss of exon 3
TCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGgtaagagtatatttattctttatataaat-aatcaatcattggtgattctcccttaatattgtcattctggcacattcttttgaccctacttacattctat
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TCCAACACATGTAAAGATTGAACTCATACAGAGACTGGCAACCTCTGGATTATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAGgtaattttggtttagcaattagcatgcattagatacttgcttcttacacatatacggt-ttgatattttaaagatcaccatccacccatttttttctataa
upper sequence: GLYMA19G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g01170.t01 (Vitis vinifera), 5'ss of exon 4
TCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGgtaagagtatatttatt--ctttatataaataatcaatcat----tggtgattctcccttaatattgtcattctggcacattcttttgaccctacttacattctat
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GCCTACTGTTGTAAAGGTTGAGCTGATTAAGATGCTAGTTTCTTCAGGATTGCCTATTGTAGAGGCTACAAGTTTTGTCTCACCAAAATGGGTGCCACAGgtaaagtaggctttggtagtttttgggagatagtcaaccttcttgtaaagtcatttgctttgcatgcctattctg-tatgttcatttttgcatagatttgt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33387531|gb|CA850738.1|CA850738EST: TGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAG TTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCT
genomic: TGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGgtaagagtat ... ctgaatccagTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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TCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGgtaagagtatatttattctttatataaataatcaatcattggtgattctcccttaatattgtcattctggcacattcttttgaccctacttacattctat
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