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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccagtatactgtaaaaagtgaaatttagaaactttcaatgagacaatgttacattgttttatccaacaacttttttcttatgcttcttggaaat...

Basic information

species Glycine max
transcript GLYMA19G30360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G56930.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccagt--atactgtaaaaagtgaaatttagaaactttcaatgagacaatgttacattgttttatccaacaact-----tttttcttatgcttcttggaaat-------------------------------------------------------------------------
|||||| || || ||| |  ||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||  | |  ||           |  | |   |   || |   |   ||    ||  ||| ||||       || |     || |||||    ||| |   ||                                                                          
GCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGgtaagtttactccatgactcttgccatatattcccggttctatgttttgaacttgtttggattcttttgcagcgaaattaccggttcttcttcatgttcatatcaacatcaaccactctgtgcatatatgtgtttgccttttcttggttgaacatatttcaaagacatatggatgaaaag

upper sequence: GLYMA19G30360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G56930.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccagtatactgtaaaaagtgaaatttagaaact-ttcaatgagacaatgttacattgttttatccaacaacttttttcttatgcttcttggaaat
|||||| || || ||| |  ||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||    ||  |  | |    ||  || ||    |  ||| |||     |  ||   |||  || |    ||                          
GCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGgtaagtt---tactccatgactcttgccatatattcccggttctatgttttgaacttgt-ttggattcttttgcag-------------------------

upper sequence: GLYMA19G30360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
GCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccagtatactgtaaaaagtgaaatttagaaactttcaatgagacaatgt-tacattgttttatccaacaacttttttcttatgcttcttggaaat
||||||||| |||||||||  |||||| || || || |||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||    | |  | |        |  | |  |   | |   || |   ||||  |  |  || |||||| | | |       | |  |   |   |  
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagtttttttttttttttttttgtacgtcttaatcttatatgtgtgtgtatgtgcatgtacttgtatccacctagtacccaaatctagtatatctgat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268384|gb|CA819447.1|CA819447
EST:     TCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATA                         CGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGC
genomic: TCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccag ... ataattgcagCGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGC
EST: gi|5342515|gb|AI794799.1|AI794799
EST:     GATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATA                         CGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGC
genomic: GATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccag ... ataattgcagCGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGC