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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaacccattgacttcatccttacttttttctaacttatgtgcattattttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattag

Basic information

species Glycine max
transcript GLYMA19G29720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g59930.1 (Oryza sativa), 5'ss of exon 3
GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag---aacccattg-acttcatccttacttttttctaacttatgtgcattattttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcat-tag
 ||  ||||||||  ||| ||||| || |||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||||||| |||      |   | ||  |||  ||   | ||| ||| | | |  ||      |  | | ||  | | ||         || ||| |  | |||  | |    | ||  ||
AGGACAAGATGCTACAGGCGAAGAAGTAATCAAACCTTATACCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgtattcagttctttatactgtatgaatgcttgtttgtcaatcctgga----acatatcgttatgtgccacacaagcaggatttgccatttaacttttctcataatgcag

upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 3
GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatat-tcagaacccattgacttcatccttacttttttctaacttatgtgcattattttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattag
 ||  |||| |||  ||||||||| || ||||| || ||||||||||||||||||||||| ||| ||||| ||||||| || || || |||||| || |    | | |||  | |  | |  |   ||||    |||   |||| |    | |||   | | |  | |  ||     || ||   | |               
AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatatttagatcgattttccttgttcggatactttttatgctt---tgcact--catatgttgacacaccagttctttaatccttttgatcacacag------------

upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaacccattgacttcatccttacttttttctaacttatgtgcattattt-tttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattag
|||||| |||| | | ||| ||||  ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||| | |     | |   |   |  ||  ||    ||   ||| |    |   |||||| ||| | |    | || |    || || | || | |    | | |  | | |||
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgt-----atctgattcttatattattggacttcg-taattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttt-tcctgtaaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298167651|gb|HO012914.1|HO012914
EST:     CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... cattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|51336831|gb|CO980697.1|CO980697
EST:     ACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: ACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... cattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|33389849|gb|CA853056.1|CA853056
EST:     CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTANTTATTAAG                         ATGNACCCACANGGAAGGATGTCACACCATTTCCGNGAGATGCGTGTNGGT
genomic: CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... cattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT