Sequence
atgc intronic sequence ATGC exonic sequenceGATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcag
Basic information
species | Glycine max |
transcript | GLYMA19G27570.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgt-ttacttttcaatgtttggataattgcag
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GCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGATCATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGgtaagtat-tccctgtcatgt---tcacatgcagttacttctgttaacggatttgtgtccttcaacaaaggtccactcaagatatcacttctcttgacttatgcag------
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttgga--taattgcag
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GCTAGCAGAGGACTTGGTCTCACAGCACATATTATTGATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattcctcccattttta-----tggtcaat---ggatgctattc----ctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcag
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G136098_T01 (Zea mays), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttgga--taattgcag
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GCTAGCAGAGGACTTGGTCTCACAACACATATTATTGATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCAGGgtcagtattcctcccattttta-----tggtcaat---ggattctattc----ctcatctagaatcatgagttaaatattcatctgagatgatattcttgagcttttttgcag
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcag
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GCTAACAGAGGGCTTGGACTCTCTGCCCATATTATCGATCACTGTAATCTTATCCTCAAGTTCCCTGAAGGCACTAACAGTACTTGGgtatgtttacacttg---tctggtttct------ttttgagatttcattggtttt-attgtgatcaagtt-----ttttacacttgcattcttatctttcaatgacag---
upper sequence: GLYMA19G27570.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcag
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GCAAACAGAGGGTTTGGAATTACTGCACATATTATTGACCACTGCAAATTGATTCTCAAGTTCCCTGAAGGCACTAACAGTACCTGGgtctgcctcttag-----cccaagaccttatt--ttatgcactcatttagttttatgttaa------aatgctgatttgctttttcttttctgtttccttcacag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409708|gb|EV279516.1|EV279516EST: ATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGG TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
genomic: ATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctct ... ataattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG