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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACAGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttgccttccgtttcattcaccacatccaatcaatctctgatcttcgatttatatatatatatatatatatatatatatatatatatatatatatatat...

Basic information

species Glycine max
transcript GLYMA19G27360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 3
ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACAGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttg-ccttccgtttcattcaccacatccaatcaatctctg---atcttcgatttatatatatatatatatatatatatatatatatatatatatatatatat
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ACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctgccgctacctgtctggtggtttgttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggt-cgcgcgtgcctacctgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300408|gb|FG988825.1|FG988825
EST:     AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttgccttc ... attggtccagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|7478459|gb|AW666273.1|AW666273
EST:     AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttgccttc ... attggtccagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|7693148|gb|AW761245.1|AW761245
EST:     AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttgccttc ... attggtccagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|298194875|gb|HO043347.1|HO043347
EST:     AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: AGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttgccttc ... attggtccagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT