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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaagatttgtcagtctggctgaatatatgactcaattgatctggacattttcattcctaatggcataattgttctgacaaggctaaatttagctttgaa...

Basic information

species Glycine max
transcript GLYMA19G26870.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G26870.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33520.1 (Oryza sativa), 5'ss of exon 4
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaagatttgtc-agtctggctgaatatatgactcaattgatc---tggacattttcattcctaatggc-ataattgttctgacaaggctaaatttagctttgaa
||  | || || ||||| ||||| || || || || ||||| |||||||||||||||||||||||||| | ||| ||||| ||| ||    |  ||  | | |  || ||    ||  ||   |   | ||| | | |  |  |  |  |   || ||||    ||  |     |  || |     
GTTGTCAGTAACCCAGAGAAGACACCGCTACATACCTTCTTCTGCAACTATGATTTGAGTGACATGCCTGCTGGAACCAAGgtatgagaaattgagaattgttatat-tacttttctttttgcctcatagacttatacgctggtggtaactgcaaatgtttctgcattgtct--tggagttcct--

upper sequence: GLYMA19G26870.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138425_T03 (Zea mays), 5'ss of exon 1
-------------------GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaa--gatttgtcagtctggctgaatatatgactcaattgatctggacattttcattcctaatggcataattgttctgacaaggctaaatttagctttgaa---
                   ||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| |||   || |    | | |   | | ||     |||   ||| || |  |||   |||  | || ||  | |     ||    |  ||   |||     | |   
AAAAAAATGACTTTGACAGGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGgtacacgaatgactaatatttttcattacg---ctcttatgaccttgg-attaatatttgtcattgcg-actgaaaatgttgggattagggttacggaggtagca

upper sequence: GLYMA19G26870.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138425_T01 (Zea mays), 5'ss of exon 3
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaa--gatttgtcagtctggctgaatatatgactcaattgatctggacattttcattcctaatggcataattgttctgacaaggctaaatttagctttgaa
||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| |||   || |    | | |   | | ||     |||   ||| || |  |||   |||  | || ||         |||| || | |    ||||       
GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGgtacacgaatgactaatatttttcattacg---ctcttatgaccttgg-attaatatttgtcattgcga-------ctgaaaatgttgggattag-------

upper sequence: GLYMA19G26870.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138425_T02 (Zea mays), 5'ss of exon 4
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaa--gatttgtcagtctggctgaatatatgactcaattgatctggacattttcattcctaatggcataattgttctgacaaggctaaatttagctttgaa---
||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| |||   || |    | | |   | | ||     |||   ||| || |  |||   |||  | || ||  | |     ||    |  ||   |||     | |   
GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGgtacacgaatgactaatatttttcattacg---ctcttatgaccttgg-attaatatttgtcattgcg-actgaaaatgttgggattagggttacggaggtagca

upper sequence: GLYMA19G26870.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g01450.t01 (Vitis vinifera), 5'ss of exon 3
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaagatttgtcagt--ctggctgaatatatg-actcaattgatctggacattttcattcctaatggcataattgttctgacaaggctaaatttagctttgaa---
|| || ||||||||||| ||||| || || ||| | |||||||||||||||||||||||||||||||||  ||||||||||||||| |       |  |||| |   | | |   ||  |||  | | ||||  ||  |  |   || |    || |||| |  | | |  | ||| |||       
GTTCTCAGCAATCCAGAGAAGACACCCCTACACTCGTTCTTTTGCAACTATGATTTGAGTGACATGCCAAGTGGTACCAAAgtaagttggaatgattactggattgttttctatgctttatttgt-tagacagattggtgtcc--tgac---ctttttcttaagatgttggaattatcttcatttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053490|gb|BM732157.1|BM732157
EST:     ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAA                         ACATTCTTGCGCCAGTAAAGTCACCCTTGAATTGACTGGCTCTACTTCCCC
genomic: ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAG-AAAGTCACCCTTGAATTGACTGGCTCTACTTCCCC