Sequence
atgc intronic sequence ATGC exonic sequenceTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGAGgtaagctattctaaatttccaattacagttaattgtgttgtgcttcagactatgcagaatgtaccttatttttttggctatgaaatattgaaatcatgtc...
Basic information
species | Glycine max |
transcript | GLYMA19G25870.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 5'ss of exon 3
TTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGAGgtaagctattctaaa---tttccaattacagttaattgtgttgtgcttcagactatgcagaatgtaccttatttttttggctatgaaatattgaaatcatgtc-
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TCTACCTCCAAGATATAGAGACTCTGTTCGGGCTATAACACCAGGCTTACCTTTGTTTCTCTATAACTACACTACTCACCAATTGCATGGTATTTTTGAGgtttgtacttccatacactttactactacaattcttattggtttattctgcagtgtttgaa----gctttagtatcaggaaacttgaaaatggttatttcctct
upper sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S4_323V6.1 (Physcomitrella patens), 5'ss of exon 2
TTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGAGgtaagctattctaaatttccaattacagttaattgtgttg--tgcttcagactatgcagaatgtaccttatttttttggcta---tgaaatattgaaatcatgtc
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ATTACCACAACGATATCGAGATTCTGTACGCACTATTCAACCAGGGCTTCCTCTTTTTCTGTACAATTATACTACCCACCAGCTTCATGGAATTTTTGAGgtaagttgt-ctgagctt---attcctcgtgaatgtactggctggttcactatcagcacaatct-cttgcttctttcgacttagttggtattccgtaattttggcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254346377|gb|GR856099.1|GR856099EST: ATACTACTCATCAGCTGCATGGTA-TTTTGAG GCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAA
genomic: ATACTACTCATCAGCTGCATGGTATTTTTGAGgtaagctatt ... tgtgttgcagGCAGCAAGTTTTGGTGGCTCTAACATAGATCCAACTGCCTGGGAGGATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGAGgtaagctattctaaatttccaattacagttaattgtgttgtgcttcagactatgcagaatgtaccttatttttttggctatgaaatattgaaatcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC