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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagactttttgtcataaactaaaatctatatcttttttctcaagatttctgaaataagtaaataaattttacaaatatcacttacagcctgttactgc...

Basic information

species Glycine max
transcript GLYMA19G24250.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 3
GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagactttttgtcataaactaaaatctatatcttttttctcaagatttctgaaata-agtaaataaatt-ttacaaatatcacttacagcctgttactgc
||||||||||   || |||| || ||||||||||| ||||||||||| || ||||| ||||| || |||||||| ||  | ||||||||||| || ||  |      |  |||||   ||  ||| ||||| ||   | ||||  | || | |||   |||  | || | | ||     ||| | |  
GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttctttcctatgcttttaatcttcctcactttcctcaa-ataaataaaatgtaatataaaaacaattatcattagcccataacaattgtcattt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334914|gb|GR844699.1|GR844699
EST:     TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG                         CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: gi|192294272|gb|FG986361.1|FG986361
EST:     TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG                         CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: gi|213594579|gb|DB957998.1|DB957998
EST:     TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG                         CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: gi|298180491|gb|HO022044.1|HO022044
EST:     TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG                         CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTACA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: gi|298167590|gb|HO012853.1|HO012853
EST:     TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG                         CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
EST: gi|213611006|gb|DB970933.1|DB970933
EST:     TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG                         CTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAACAAAGGTGCTTCTCCCCAACTGTTGGAGGATGTAGA