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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttgacctgaaatttctctacattttcctttctattttcttgctcaacaatatgatttgtgaagttagcaaccatgttttgtcaaactagtccct...

Basic information

species Glycine max
transcript GLYMA19G22530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g70960.2 (Oryza sativa), 5'ss of exon 3
TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttgacctg-aaatttctctacattttcctttctattttcttgctcaacaatatgatttg--tgaagttagcaaccatgttttgtcaaactagtccct
|||| ||||  |||| |||||||||||| ||||||||  ||| |   |||  |||||| ||||| ||    ||||||||||| |||||||||||||| |||| |||||  |    | | || | |   ||        | || |        || |  ||| ||   |  |   ||||| | ||  |     |  || |    
TTGCTACAATTGCATCTGCTGATGAAGCGGAGCATGGGTTGGAAGCCCCACACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATCgtaagtttatcgaatagacttatttttgttaaatagcttgttctgactagagactacttgacttcatttcaagaagcaatcgtgcatctaatatataatg---

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 3
TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttgacctgaaatttctctacattttcctttctattttcttgctcaacaatatgatttgtgaagtta-gcaaccatgttttgtcaaactagtccct---
|||| |||| ||||| |||||||||||||||||||||| |||||   |||   ||||| ||||| ||    |||||| | || || |||||||| || |||| |||   | | ||   |  |||         | | |||||| |   |  |||  |   |||   || ||  | || | |  ||| | |||   |        
TTGCTACAATAGCATCTGCTGATGAAGCTGAGCATGGCTTGGCAGCCCCAGATTATCCCTGGCCACATGCTGGCATCATGAGCTCGTATGATCACGCATCgtaagtc--aacagatcctcttcttttcacgaatctttattttata--ttgacatgagtgtttacaaatttgtgtaagccttatttatgaaatatggattggtg

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 3
TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttgacctgaaat-ttctctacattttcctttctattttcttgctcaacaatatgatttgtgaagtta-gcaaccatgttttgtcaaactagtccct
|||| |||| ||||| |||||||||||||||||||||  |||||   |||   ||||| ||||| ||    |||||| | || || ||||||||||| |||| |||    | |    | |||| | |||    |||| | |  | |       |   ||| |||   || | | | || | |  ||| | |||   |     
TTGCTACAATAGCATCTGCTGATGAAGCTGAGCATGGTTTGGCAGCCCCAGATTATCCGTGGCCACATGCTGGCATCATGAGCTCTTATGATCATGCATCgtaagtcaaccatagcttcttcttttcatgaagctttgtttcatatgatatggcgtgatg-tttacaaattcatgtaagccttatttatgaaatatggatt-

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 5'ss of exon 2
TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagt--ttgacctgaaatttctctacattttcctttctattttcttgctcaacaatatgatttgtgaagttagcaaccatgttttgtcaaactagtccct---------
|| | ||    |||| ||||||||| ||||| ||||| ||||  ||||| | ||| || ||||| ||  ||||||| || || |||||||| ||||||||||||||  |  | ||  ||||     |   |     |   |||      || ||    |  ||| | ||| || |  ||    ||         |  |   |         
TTTCTACTGTTGCATCTGCTGATGAGGCTGAACATGGTCTGGAGTGTCCTAACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCgtgagtgttcaagctacaattcaatca---tcatagtgaaattgcaacactaaagttgaaaattagagaaatttgagactgctttactgacggttgatttgtaatgagcag

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 2
TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttgacctgaaatttctctacattttcctt--tctattttcttgctcaacaatatga-tttgtgaagttagcaaccatgttttgtcaaactagtccct--
||||||||| ||| | | | ||||| ||||| ||||||||||||||||||| |||||||||||||||||  ||||| || ||||||||||| |||||||||| ||   ||    |  ||    ||  | || |    |||||      |       ||| || |||| |||  ||  |||   | ||       ||  |||||  
TTGCAACAATAGCTTCTTCAGATGAGGCTGAACATGGCCTGGCATGTCCAAACTATCCATGGCCTCACAGCGGCATTCTCAGTTCATATGACCATGCTTCgtaagca-gattacatcttatgttatctattacgcaatctatagaaaagtgtcttgataggactttgagaaacta--aacatcggttcaaaggcct--tcccttg

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 3
TTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttgacctgaaatttctctacattttcctttctattt-tcttgctcaacaatatgatttgtgaagttagcaaccatgttttgtcaaactagtccct--
||||||||| ||||| ||||||||| |||||||||||  | | |||| ||| |||||| |||||||||   ||||| || ||||||||||| |||||||||||||| |    |||| ||    |  || || |     |||  || |     |||  |  | |||     | | |||  || || | ||||| |  |      
TTGCAACAATAGCATCTGCTGATGAGGCTGAGCATGGATTAGAATGTGCAAACTATCCCTGGCCTCACTCAGGCATTCTCAGTTCATATGACCATGCTTCgtgagtgtctattgaatttaagatcaatcttgcagagaattgatcctaagacacag-acaacttg-actctcaacaaatat-ttatctcaaatttatataatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295297|gb|FG985951.1|FG985951
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: gi|21888018|gb|BQ741231.1|BQ741231
EST:     CCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: CCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: gi|207693851|gb|GD676364.1|GD676364
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGT
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGT
EST: gi|192323087|gb|FK017373.1|FK017373
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: gi|13181463|gb|BG352803.1|BG352803
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: gi|151402509|gb|EV272322.1|EV272322
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: gi|18692685|gb|BM521533.1|BM521533
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
EST: gi|192306980|gb|FG999985.1|FG999985
EST:     AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTC                         GATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC
genomic: AGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCgtgagtttga ... gaatgagcagGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTC