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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTGATCGCCAACGAGGTAGGGGCCAACTGTCTGTGGAATCACCTCTTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattccccttctctcctgattaatgacgaatactattatactatatccattgtactgatgaacagaaatattaggttggtgttggtctaatgcttgatattttccaaatataacctgactaaattctgatgtccgttacttag

Basic information

species Glycine max
transcript GLYMA19G22520.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326903|gb|AW620701.1|AW620701
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
EST: gi|15287126|gb|BI471017.1|BI471017
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
EST: gi|20815055|gb|BQ299533.1|BQ299533
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
EST: gi|19348475|gb|BM893007.1|BM893007
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
EST: gi|17153028|gb|BM142961.1|BM142961
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
EST: gi|26058132|gb|CA801046.1|CA801046
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
EST: gi|20814963|gb|BQ299441.1|BQ299441
EST:     TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAG                         GATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT
genomic: TTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattcccct ... cgttacttagGATGAAGTTATTCAAAGGGAAGAAGCAATAAGAAAAGAGTATAATGAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCTTGATCGCCAACGAGGTAGGGGCCAACTGTCTGTGGAATCACCTCTTCTATGGTTAAAATCTGAGCTGGATTACCTGTCAGGAAGTCCAATTAAGgtattccccttctctcctgattaatgacgaatactattatactatatccattgtactgatgaacagaaatattaggttggtgttggtctaatgcttgatattttccaaatataacctgactaaattctgatgtccgttacttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA