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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCAAGGGAATTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTGCCAGATAACAGgtatagttatatggtttgcagttaaagctatttaactaagctgttatttatctttattaatatttataacttactgtgtggcattatcatgttatgcttttgcag

Basic information

species Glycine max
transcript GLYMA19G20750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G20750.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0056g00910.t01 (Vitis vinifera), 5'ss of exon 4
AGTGCAAGGGAATTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTGCCAGATAACAGgtatagt-tatatggtttgcagttaaagctatttaactaagctgttatttatctttattaatatttataacttactgtgtggcattatcatgttatgcttttgcag
 ||||||||||||||||||||||| |||||||    ||||| ||| |  |||| |||| |||||  ||  ||| ||  ||   | |  || |  |  || |               ||||  | |  ||  ||  | |   |   | |||| | ||    | ||||||
CGTGCAAGGGAATTATATTTGAAAGATTGGGATACACAGAGGCAGAGATTGCCTGATATCAGgtgcaggatatgtgactttttgctcgaggtgctggacaa--------------cttatacaaaactaacacagaatccttaagaatatcttttt----tcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193569510|gb|FK523125.1|FK523125
EST:     TTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTGCCAGATAACAG                         CAATGTTGATAAAATAAGGGAATTTATAAGGAGTGTGTATGTGGATGGAAG
genomic: TTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTGCCAGATAACAGgtatagttat ... gcttttgcagCAATGTTGATAAAATAAGGGAATTTATAAGGAGTGTGTATGTGGATGGAAG