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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataactattgcttatgttattttcttaattgtgtgtag

Basic information

species Glycine max
transcript GLYMA19G06460.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g38520.2 (Oryza sativa), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaat-aactattgcttat-gttattttcttaattgtgtgtag
| || ||| | |||||||| || || |||||||||||||| ||||| ||| | || ||||||||||||||||||||| |   ||| ||| ||||||||||||     | |  ||||    |  |  ||     ||| | | |||| |||  | |  |  |||      |  |  ||||  | | || |  ||| |||   |||| | | ||          
AGGACAAGCGTGCACTGAAGGTGGCAAAGAGAAAGCTTGGCACCCACAAGAGGGCCAAGAAGAAGAGAGAGGAGATGGCTGGTGTCCTCAGGAAGATGAGgtg----tgtaatcttccagccttgataaaaacacc-tgttattattctattggttaccttg------tcttccgttgcaattgaatttgtgcctattaatattgtttgaa----------

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g62350.1 (Oryza sativa), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataactattgcttatgttattttcttaattgtgtgtag
| || ||| | |||||||| || || ||||||||||| || ||||| ||| | |||||||||||||||||||||||| |   |||  || ||||||||||||     | |||  ||  | |   ||| |||  |    ||  || || || |  |  |||| |    |  |||| ||     |   |||||   |     || |  |            
AGGACAAGCGTGCACTGAAGGTCGCTAAGAGAAAGCTCGGTACCCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtg----tgtgtctttactactgcattctgca-atttcattgttgatgttctctgttttttagttgct--attttttttccgtgcgtattgtagaatgggttctact------------

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G009936_T01 (Zea mays), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataactattgcttatgttattttcttaattgtgtgtag
| || ||| | || |||||  |||||||||||||||||||||| || ||| | ||||||||||||||||||||||||      || ||| |||||||||||||  |  ||       |||   | | || |  | | || |||    |||| | || | |       |   |||  |  | ||  || |||| | | | | |                 
AGGACAAGCGCGCTCTGAAGCTTGCCAAGAGAAAGCTTGGAACTCACAAGAGGGCAAAGAAGAAGAGAGAGGAGATGATGGGCGTCCTCAGGAAGATGAGgtttgtaaattcgaaacttttgttgtgatacaaaac-taaaatactgcttggtagcctgtcttgtcttatttttccttctgatgtct-ttgcatgtttaagt-----------------

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G850966_T03 (Zea mays), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataact-attgcttatgttattttcttaattgtgtgtag
| || ||| | || |||||  |||| ||||||||||||||||| || ||| | |||||||||||||||||||||||| |    || ||| |||||||||||||  |  ||||     |||    ||| ||   |  | | |||    |||| | || | |     |  || ||||       ||| | ||||| | || || ||                
AGGACAAGCGTGCCCTGAAGCTTGCTAAGAGAAAGCTTGGAACTCACAAGAGGGCAAAGAAGAAGAGAGAGGAGATGGCGGGCGTCCTCAGGAAGATGAGgtttgtaaatgtggaacttt----attgtgataaaacaaaaatattgcttggtagcttgtctttcaaatgctttggcatggttaattcattgcctctgctaatt----------------

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G37600.2 (Arabidopsis thaliana), 5'ss of exon 2
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataactattgcttatgt-tattttcttaattgtgtgtag--------------------------
|||| ||| | || || || ||||| ||||| ||| | || || || ||| | || |||| |||||||||||||||||| | ||||||||| ||||||||||     ||| |  |||  |   | ||  || |  |      || |  |||       | | ||  ||  ||   || | |   | |  |  | |||| ||     | || | |    |                           
AAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgt---attatttgatttcattcgtttttagcttcacaagagtttcaatttggcatttctctagatggtctatccatttgcatacatttctcttcatgtctagcagttgaactatactaatttttcgactgtcttgaccacttgcag

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G53740.2 (Arabidopsis thaliana), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcatt--ttggaaagttgatttgttggtaataactattg-cttatgttatttt-cttaattgtgtgtag
|||| ||  | || || || ||||| ||||| ||| | |||||||| ||| | || |||   ||||||||||||||||||| ||||||||| ||||||||||                 | || | |      | | |||  ||    |||||    |   ||  |||    |||  ||  || ||| || ||  || ||  | |||  ||| ||    | ||
AAGACAAACGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaac-------------tgaacaatcgaacaagcttattgttggctttgtttttctcaattcaaaaaccaattcttttatagtaattactgatttttgggactttgtttacttacacgcag

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G02450.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgt---tgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataact-attgcttatgttattttcttaattgtgtgtag
|||| ||||| || || |||||||||||| ||||| | ||||| || ||| | || ||    ||||||||||||||||||| ||||||||| ||||||||||   | ||||    ||||||||||| |     | | |  |||   |  |  | || ||   ||   ||    || | ||  |  |  || ||| ||  || | |||  ||  |||       
AAGACAAGAGAGCTCTTAAAGTTGCCAAGCGAAAGTTGGGAACTCACAAGAGAGCTAAACGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtatctcctcttccatcttttttcaacaaatatcattcattatgcatcttactatttgctccttcataatgaaatgtttttcttcttgctgattcctcttgctttttgtttctttgcag----

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G53740.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcatt--ttggaaagttgatttgttggtaataactattg-cttatgttatttt-cttaattgtgtgtag
                    ||||| ||||| ||| | |||||||| ||| | || |||   ||||||||||||||||||| ||||||||| ||||||||||                 | || | |      | | |||  ||    |||||    |   ||  |||    |||  ||  || ||| || ||  || ||  | |||  ||| ||    | ||
--------------------GTTGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaac-------------tgaacaatcgaacaagcttattgttggctttgtttttctcaattcaaaaaccaattcttttatagtaattactgatttttgggactttgtttacttacacgcag

upper sequence: GLYMA19G06460.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g00610.t01 (Vitis vinifera), 5'ss of exon 3
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctct-----atgttct-tttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgt-tggtaataactattgcttatgttattttcttaattgtgtgtag---------------------------------------------------------------------------
| |||||| | |||||||||||||| ||||||||||| || || || ||| | |||||||||||| | ||||||||||| | ||||||||| ||||||||||   |       |  | || ||||||| ||| | | | |   || || ||  |||||||    | || |  | |  |     |||| ||| ||   | || |||| | | |||| |  ||  ||                                                                            
AGGATAAGCGTGCACTGAAAGTTGCAAAGAGAAAGCTGGGTACTCACAAGAGGGCAAAGAAGAAGCGTGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtaatttgtaataacatgctatttttcattatca-gtgaatt-taaaagtatgcttgttgt--gtgtgaattgatattaaacatggtcatatctgaagttt-tgttgtatccttactgctgc-tatccaacgtaacttgaggatttggttttccaatttacccatacaattaaattcttgtttatggaatgttttatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193478265|gb|FK445738.1|FK445738
EST:     ATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: ATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|24206039|gb|BU965292.1|BU965292
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|193392972|gb|FK360182.1|FK360182
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209697111|gb|BW680521.1|BW680521
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|208318079|gb|GE117196.1|GE117196
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|14258658|gb|BG881566.1|BG881566
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|208311140|gb|GE103406.1|GE103406
EST:     GAGAGAGGAGANGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: GAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|31464170|gb|CD406198.1|CD406198
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|4395665|gb|AI494662.1|AI494662
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|192325166|gb|FK017537.1|FK017537
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTTCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|16348063|gb|BI973658.1|BI973658
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209719271|gb|BW679813.1|BW679813
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209714304|gb|BW665579.1|BW665579
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|6845917|gb|AW348207.1|AW348207
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209719272|gb|BW679814.1|BW679814
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209700121|gb|BW652979.1|BW652979
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACCTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209714303|gb|BW665578.1|BW665578
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209724502|gb|BW662984.1|BW662984
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|213610477|gb|DB978532.1|DB978532
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209700122|gb|BW652980.1|BW652980
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACCTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|254319333|gb|GR828953.1|GR828953
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|4306541|gb|AI443919.1|AI443919
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|31461747|gb|CD403775.1|CD403775
EST:     CGCGCCAAGAAGAAGAGAGAGGAGATGTCCCATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACCAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|208308919|gb|GE104097.1|GE104097
EST:     GAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: GAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209697112|gb|BW680522.1|BW680522
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|8827557|gb|BE211287.1|BE211287
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|8826825|gb|BE210555.1|BE210555
EST:     CGCGCACTGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGA
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGA
EST: gi|208337801|gb|GE135197.1|GE135197
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTC
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTC
EST: gi|193678468|gb|FK617976.1|FK617976
EST:     CCGGGAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|193482276|gb|FK444491.1|FK444491
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTCTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|209724501|gb|BW662983.1|BW662983
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|10232899|gb|BE801787.1|BE801787
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|19935087|gb|BQ080117.1|BQ080117
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|58023657|gb|CX710398.1|CX710398
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|151404856|gb|EV274670.1|EV274670
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|31472277|gb|CD414305.1|CD414305
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|213604861|gb|DB960556.1|DB960556
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|254320876|gb|GR827325.1|GR827325
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|23730859|gb|BU763532.1|BU763532
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|7591495|gb|AW707227.1|AW707227
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
EST: gi|208332687|gb|GE126936.1|GE126936
EST:     CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAG                         GGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG
genomic: CGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctat ... ttgtgtgtagGGCTGGTGGAGCTGGAGACAAGAAGAAATAAGTCTTGTTTACTTTTTCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGATAAGAGGGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAGCGCGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGgttgctctatgttcttttttcaatattatgcgtaccctataattaatcttgttggcattttggaaagttgatttgttggtaataactattgcttatgttattttcttaattgtgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG