Sequence
atgc intronic sequence ATGC exonic sequenceGCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaacttaatttatactgttgaaaaattgtgatatattttgtagaatattttttaagctatgatcagtgcttgtctgttgtttgttatagttcacc...
Basic information
species | Glycine max |
transcript | GLYMA19G05360.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g31840.2 (Oryza sativa), 5'ss of exon 3
GCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaacttaatttatactgttgaaaaattgtgatatattttgtagaatatttt---ttaagctatgatcagtgcttgtct--gttgtttgttatagttcacc---------------------------------------------------------------------
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AAGAATAAGGAAAGGAATTCCTGATTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAACCCTGGGGTTTATGAGgtacctataacaattgtgaaag--aactgcttgccctgatttttgttgaatgttccctattattttttaactttctgttgtcttagtagttatttctaaattatcaggatattgtcttaagagtcatacatatcttgtcaacattattacatttctatactattttttggacag
upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 3
GCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaacttaatttatactgttgaaaaattgtgatatattttgtagaatattttttaagctatgatcagtgcttgtctgttgtttgttatagttcacc
||| ||||||||||||||||| |||||| | || || ||||||||||| ||||| || || ||||| ||||| || || |||||||| || ||||| |||||| | || | | | || || | || | || |||| || ||| | || | || |
GCGAATAAGGAAAGGAATTCCTGATTGTCTCAGAGGACTTGTTTGGCAGTTGATTTCAGGCAGTCGGGACCTCTTACTAATGAACCCAGGGGTTTACGAGgtacccacaaggatccttttttcttccaacttccggcattatatgattgtgatttgcctagttatacctgttactagattgagaaacaggggaacaagtg
upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G02460.1 (Arabidopsis thaliana), 5'ss of exon 3
GCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaacttaatttatactgttgaaaaattgtgatatattttgtagaatattttttaagctatgatcagtgcttgtctgttgtttgttatagttcacc
||||||| | ||||| || || ||||| ||| | || ||||||||||| || || || |||||||||||||| ||||| ||||| ||||| |||||||||||||| | |||||| || | ||||| | || | | || || | | | ||| | | | || |
GCGTATACGAAAAGGGATCCCTGATTGCTTACGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGAGACCTTTTGCTTATGAATCCTGGTGTTTATGAGgtaatcttcgccgtttatatcctt---acattgtt---tcttctctgagtcatattctgatcatctatcgattttcctatgaag----------------
upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G15930.1 (Arabidopsis thaliana), 5'ss of exon 3
GCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaacttaatttatactgttgaaaaattgtgatatattttgtagaatattttttaagctatgatcagtgcttgtctgttgtttgttatagttcacc
||| || | ||||| || || ||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||| ||||| || || ||||||| |||||| |||||| | | | || || |||| || ||||| | | || | | || | ||| | | | | | ||
GCGGATTCGAAAAGGGATCCCTGATTGCTTAAGGGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGTTTATGTGgtaat-aacttattatctccttgtgtgtt-ttgttattcattttctttggcttcattgctggaaagaaaaaaacttacaattctctcgatttcattatag
upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0083g00540.t01 (Vitis vinifera), 5'ss of exon 3
GCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaa----ttaacttaatttatactgttgaaaaattgt----gatatattttgtagaatattttttaa--gctatgatcagtgcttgtctgttgtttgttatagttcacc
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||| || |||| ||| | | | ||| | | || ||||| || ||||||| ||||| | | ||||| | | || ||
ACGTATAAGAAAAGGAATTCCTGATTGTTTAAGGGGACTTGTTTGGCAGTTGATCTCAGGAAGTCGTGACCTCTTGCTGATGAACCCTGGAGTTTATGAGgtatacctttttcttattttctcatttcaaaaggtaaccttggttagatttttctagattttttttatatgctatatttattgctttatttatcttcatt----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151405260|gb|EV275074.1|EV275074EST: TGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAG CAACTAGTCATATATGAGACATCTGCCTCTGAACTGGATATAATTCGAGAT
genomic: TGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaact ... cctattgcagCAACTAGTCATATATGAGACATCTGCCTCTGAACTGGATATAATTCGAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGTATAAGGAAAGGAATTCCCGATTGTTTAAGGGGCCTTGTTTGGCAATTGATATCTGGAAGTCGAGACCTATTGCTGATGAACCCTGGAGTTTATGAGgtaattaacttaatttatactgttgaaaaattgtgatatattttgtagaatattttttaagctatgatcagtgcttgtctgttgtttgttatagttcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT