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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATCAAACCTTAGGGCTGTGATTCTCCACAGTCCAATCTTATCTGGCCTTCGTGTCATGTATCCTGTAAAGCGCACATACTGGTTTGACATTTATAAGgttttacctttatcaatgctgaattggtgaatcataattcataatgttcaattttcattcattttaatattattggtcttcttttgatgcag

Basic information

species Glycine max
transcript GLYMA19G04900.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G04900.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0083g00800.t01 (Vitis vinifera), 5'ss of exon 3
TTTATCAAACCTTAGGGCTGTGATTCTCCACAGTCCAATCTTATCTGGCCTTCGTGTCATGTATCCTGTAAAGCGCACATACTGGTTTGACATTTATAAGgttttacctttatcaatgctgaattggtgaatcataattcataatgttcaattttcattcattttaatattattggtcttcttttgatgcag
 |||||||   | ||||||||  ||||||||||  ||||||| ||||| ||| | ||| ||||||| || || || ||||| |||||||||||||  |||||||  | |   |          ||  |||||  | | |  | ||||  | |||  ||| |  |||  | || ||| ||  || || |||||
GTTATCAAGATTGAGGGCTGTAGTTCTCCACAGCGCAATCTTGTCTGGACTTAGAGTCCTGTATCCAGTGAAACGGACATATTGGTTTGACATTTTCAAGgttt-gcttgcctt---------ttaatgaat--tcaatggttatgta-agtttgaatttaacttaccactaatggcctatttatggtgcag

upper sequence: GLYMA19G04900.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S123_154V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTATCAAACCTTAGGGCTGTGATTCTCCACAGTCCAATCTTATCTGGCCTTCGTGTCATGTATCCTGTAAAGCGCACATACTGGTTTGACATTTATAAGgttttacctttatcaatgctgaattg--gtgaatcataattcataatgttcaattttcattcattttaatattattggtcttcttttgatgcag-------
  || | |  ||| | | |||  | || |||||||||||| | || || ||||| || ||||| || || || ||||| ||||||||||||||||| ||||| |     | | | || |   ||||  |  |  | |||| ||   |   ||| || ||  |    |    |     |  ||  ||| ||           
GCTACCCAGTCTTCGAGGTGTTGTACTTCACAGTCCAATCCTTTCCGGACTTCGAGTTATGTACCCAGTGAAACGCACGTACTGGTTTGACATTTACAAGgtatgctgatgaactattccttattgcagcaacacgtaatgcaggtttcacaaatt-cacacggaatctcttccaaagcttttattttatatgagcagacc

upper sequence: GLYMA19G04900.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19908 (Selaginella moellendorffii), 5'ss of exon 3
TTTATCAAACCTTAGGGCTGTGATTCTCCACAGTCCAATCTTATCTGGCCTTCGTGTCATGTATCCTGTAAAGCGCACATACTGGTTTGACATTTATAAGgttttacctttatcaatgctgaattggtgaatcataattcataatgttcaattttcattcattttaatattattggtcttcttttgatgcag
  |  |||  ||  |||||||  |||| ||||| || ||  ||||||| || || || |||||||| || |||||||| |||||||||||||| || |||||   || ||       | ||  ||      |||   |||  |     |||  | |  ||        | |  |  | || ||||   ||||
ACTGCCAAGGCTCCGGGCTGTAGTTCTTCACAGCCCGATTCTATCTGGACTGCGAGTAATGTATCCCGTGAAGCGCACGTACTGGTTTGACATCTACAAGgt---acttt-------gttgttttctcttttcacttttcccagcacgcaagctccgctc--------actgctttttttgttttcgcgcag