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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggtgaaggtattaattatttcttattcatcctccaaccaaaaagcaaaaatctaaaaaaacaaatgtttatag

Basic information

species Glycine max
transcript GLYMA19G02360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 4
TGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggtgaaggtattaattatttcttatt--catcctccaaccaaaaagcaaaaatctaaaaaaac--aaatgtttatag----
 ||||||||||| || || || ||||||||||| |||||||| ||| | |||||  | || ||||| ||||||||||| || ||||| || ||||| |||||||| |        |   ||| |   | ||||   |   | ||   | |  | || | ||| | |   |  |||| || ||      
AGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGgtatgcaaccatgtttgagaatcaaaacatattagaaatgttcatttagattgtaacattctcatatttcttaaatattcattttcag

upper sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 4
TGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggtgaa-ggtattaattatttcttat-tcatcctccaaccaaaaagcaaaaatctaaaaaaacaaatgtttatag
|||||| || ||||| || ||||| ||||| || |||||||| ||  | || ||  | || ||||||||||| |||||||||||||||||| | ||||||||| ||   ||||  | ||||   | |   | | ||||  |  |  || |  |    |   ||    |       | |||||
TGCACTGGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGTCCAGTCATTTATCGTGATTTTAAAACATCTAATATACTACTGGATGCGgtaagttaatgaataggattatgcagtgtgtgtctcattattta--catactgttgcatcttatgttatattgcttgtatag

upper sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
TGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggtgaaggtattaattatttcttattcatcctccaaccaaaaagcaaaaatctaaaaaaacaaatgtttatag
||| |||||||| || ||||| || |||||||| |||||||| ||| | || ||  |||| ||||| || |||||||| || ||||| || |||||||||||| | |  |     |||| |    ||   | |  || | ||  ||||        || |   || | |  | |||  ||
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaacta----tattgaaatgttaaaaatattcattcatacaaatgt-----atttgctaacatattttttt-cag

upper sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G28690.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggtgaaggtattaatt-----atttcttattcatcctccaaccaaaaagcaaaaatctaaaaaaacaaatgtttatag-----
||||||||||||||| |||||||| || ||||| || ||||| ||| ||| |||  | |||||||| ||||||||||||||||||||  || | |||| |||||||  |  |     ||||       |  ||   |   ||||    |   |     | ||  |  | ||| ||||| |   |      
TGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGCTGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATTTTACTGGATGGGgtatgtctgaaagccacttaacccgataacctcaactctgtcctttctctctatgtttataaattttagaaaaaaatgctcccattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063935|gb|BU578708.1|BU578708
EST:     GGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCG                         GAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAG
genomic: GGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggt ... atgtttatagGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAG
EST: gi|23733669|gb|BU765039.1|BU765039
EST:     GGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCG                         GAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAG
genomic: GGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggt ... atgtttatagGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAG