Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatattatattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatctttttctcgtatga...

Basic information

species Glycine max
transcript GLYMA19G01470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 3
GACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatattatattatatatatatatatatatatatatatatatatatatatat-atatatatatatatatatatatatattatctttttctcgtatga
 |  |  |  || || ||||| ||||| ||  |||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||  |||| || | |  ||| |||||| | | | | ||       || ||   | ||  |  ||| |||||||| | | || |   | | |||   ||  |  | ||   
AAAGTTTATCGACACGGGAAAACAATTCAACATGATTGCAGCTTCTTGGATTCAGTTCATGATCCATGATTGGATTGATCATCTTGAAGACACTCACCAAgttcgtcaattctattatttttctgtttaatccatcatttacgcacatgcacttatcatatatatgttttta-acgaaaaaattgatttggtaacttag--

upper sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 3
GACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatatt--atattatatatatatatatatatatatatatatatatatatatatatatatatata-tatatatatatatattatctttttctcgtatga-
    | ||  || || |||||||| || ||  |||||||||| ||||||||||| || ||||| ||||||||||| |||||| | ||||| ||  | |||||| |   |||  | || |  |   ||  |  |     || ||  |  ||||  |   ||     |||| ||  |||  || |||  |||   | || |   | 
AGATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCGTCTTGGATTCAGTTCATGATACATGATTGGATTGATCATATGGAGGATACCCAGCAGgtcttgccatttaagatcaacttcttacttgaaatagaatttaatttaatattcaagaatgagattataataattatgaatctatggtctgaatatctttgtag

upper sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 4
GACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatattatattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatctttttctcgtatga
 |  | ||  || || |||||||| || ||  |||||||||||||||||||||| || ||||| ||||||||||  ||||| || ||||| ||  | |||||| |      || | | ||  || | |   |  | ||| |   || ||  |  ||||| |   ||     ||||   ||  |   |  || | |     
AAATTTCACTGACACGGGAAAGCAGTTCAACATGATAGCAGCTTCTTGGATTCAGTTCATGATACATGATTGGACTGATCACCTGGAGGATACCCAGCAGgtctt---gccatttaagatcaatttcttacttgaaataga---atttaatttaatatagaagaatgagattataagaattatgaatgcttgtag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519151|gb|BM188193.1|BM188193
EST:     TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAG                         ATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
genomic: TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatat ... gtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
EST: gi|5058116|gb|AI736592.1|AI736592
EST:     TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAG                         ATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
genomic: TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatat ... gtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
EST: gi|254347310|gb|GR853559.1|GR853559
EST:     TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAG                         ATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
genomic: TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatat ... gtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
EST: gi|209698951|gb|BW652821.1|BW652821
EST:     TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAG                         ATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT
genomic: TTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGgtccttatat ... gtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCT