1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatacttttaaatttaacatctcagtcaatcagaaaaattattttagacttgaaatctcaagccacttataattttcaaaattattatcatgagaagtgcattatcagtattattcatatcacaaggaataaattgtttgatcatgttccagagatgagtagtaaccaaagatttctgtgattcag
species | Glycine max |
transcript | GLYMA19G01210.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|42722748|gb|CK768647.1|CK768647
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAANATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|254342880|gb|GR859042.1|GR859042
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|8285757|gb|BE023316.1|BE023316
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAANTGCCAGAAAGGTGTCTTGATEST: gi|7232402|gb|AW567758.1|AW567758
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACEST: gi|15664582|gb|BI701953.1|BI701953
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGAC
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|11689652|gb|BF597328.1|BF597328
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: TCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|9986235|gb|BE660343.1|BE660343
genomic: TCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCATGACANG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAANGTGTCTTGAEST: gi|254340370|gb|GR858495.1|GR858495
genomic: CAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCA-GACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGA
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|6667256|gb|AW278707.1|AW278707
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAACATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|10255348|gb|BE823114.1|BE823114
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: GATGTGATTGTTATCAACACCCNNCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|15201822|gb|BI425077.1|BI425077
genomic: GATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|13478163|gb|BG507754.1|BG507754
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|11687585|gb|BF595261.1|BF595261
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAAGTGTCTTGATEST: gi|254344633|gb|GR855504.1|GR855504
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|209713325|gb|BW684412.1|BW684412
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CACTGAGCAGACAAG GGGATTGTTNGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|42722694|gb|CK768593.1|CK768593
genomic: CACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|209718223|gb|BW657842.1|BW657842
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|42722674|gb|CK768573.1|CK768573
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATEST: gi|151395171|gb|EV265042.1|EV265042
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
genomic: CCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatacttttaaatttaacatctcagtcaatcagaaaaattattttagacttgaaatctcaagccacttataattttcaaaattattatcatgagaagtgcattatcagtattattcatatcacaaggaataaattgtttgatcatgttccagagatgagtagtaaccaaagatttctgtgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG